Co-expression analysis

Gene ID Zm.15846.1.A1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g52360: coatomer protein complex, subunit beta 2 (beta prime), putative (HF=1e-4)
Module size 6 genes
NF 0.61
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.9199.00.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.6077.80.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.6077.80.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.4352.80.99RPTR-Zm-M10961-2_atRPTR-Zm-M10961-2---O.I.H.G.S.X.
0.2724.60.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
8.098.0GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.697.9GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.297.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.2369.2.S1_at, orthologous to the query gene, Zm.15846.1.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9799.9Ptp.2369.2.S1_atAt1g52360hypothetical protein-3e-14At3g15980coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.3458.3PtpAffx.206917.1.S1_atAt1g52360hypothetical protein-2e+0At5g53590auxin-responsive family proteinO.I.H.G.S.X.
0.2850.5PtpAffx.212554.1.S1_x_atAt1g52360GRAS family transcription factor LATERAL-6e-4At1g55580LAS (Lateral Suppressor)O.I.H.G.S.X.
0.2747.1PtpAffx.71896.1.S1_atAt1g52360--4e-2At1g27390TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2)O.I.H.G.S.X.
0.2340.5PtpAffx.71553.1.A1_atAt1g52360--2e+0At3g10240F-box protein-relatedO.I.H.G.S.X.
0.2238.3PtpAffx.217169.1.S1_atAt1g52360hypothetical protein-9e-1At1g27450APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)O.I.H.G.S.X.
0.2136.5PtpAffx.16369.1.S1_atAt1g52360--5e+0At5g62400unknown proteinO.I.H.G.S.X.
0.2034.6PtpAffx.219388.1.S1_atAt1g52360hypothetical protein-3e-2At3g22600protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.1932.7Ptp.462.1.S1_atAt1g52360hypothetical protein-4e-2At1g69980unknown proteinO.I.H.G.S.X.
0.1830.8PtpAffx.200069.1.S1_s_atAt1g52360hypothetical protein-1e-1At1g52470hydrolaseO.I.H.G.S.X.
0.1729.1PtpAffx.134332.1.A1_atAt1g52360--6e+0At4g15450-O.I.H.G.S.X.
0.1729.1PtpAffx.207626.1.S1_atAt1g52360hypothetical protein-1e-20At1g64630WNK10 (WITH NO LYSINE KINASE 10)O.I.H.G.S.X.
0.1729.1PtpAffx.202018.1.S1_atAt1g52360--2e+0At5g37900seven in absentia (SINA) family proteinO.I.H.G.S.X.
0.1729.1PtpAffx.5884.1.A1_atAt1g52360--8e-1At1g73540atnudt21 (Arabidopsis thaliana Nudix hydrolase homolog 21)O.I.H.G.S.X.
0.1626.9PtpAffx.203211.1.S1_atAt1g52360hypothetical protein-1e-3At4g23020unknown proteinO.I.H.G.S.X.
0.1626.9PtpAffx.209890.1.S1_atAt1g52360hypothetical protein-8e-1At5g23120HCF136O.I.H.G.S.X.
0.1525.3PtpAffx.212371.1.S1_atAt1g52360hypothetical protein-1e+0At2g30570PSBW (PHOTOSYSTEM II REACTION CENTER W)O.I.H.G.S.X.
0.1525.3PtpAffx.141218.1.A1_atAt1g52360--3e-1At5g64400-O.I.H.G.S.X.
0.1525.3PtpAffx.201198.1.S1_atAt1g52360--1e-8At1g49960xanthine/uracil permease family proteinO.I.H.G.S.X.
0.1423.5PtpAffx.218477.1.S1_x_atAt1g52360hypothetical protein-1e+0At2g21650MEE3 (MATERNAL EFFECT EMBRYO ARREST 3)O.I.H.G.S.X.
0.1423.5PtpAffx.43639.1.A1_a_atAt1g52360--4e-1At3g61890ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX 12)O.I.H.G.S.X.
0.1423.5PtpAffx.222163.1.S1_atAt1g52360hypothetical protein-4e-1At3g14230RAP2.2O.I.H.G.S.X.
0.1423.5PtpAffx.214054.1.S1_atAt1g52360hypothetical protein-2e-1At4g30510AtATG18bO.I.H.G.S.X.
0.1423.5PtpAffx.129452.1.A1_atAt1g52360hypothetical protein-2e-1At2g32640unknown proteinO.I.H.G.S.X.
0.1321.6PtpAffx.72440.1.S1_atAt1g52360--6e+0At4g14520DNA-directed RNA polymerase II-relatedO.I.H.G.S.X.
0.1321.6PtpAffx.11994.2.A1_atAt1g52360hypothetical protein-2e-7At1g14990unknown proteinO.I.H.G.S.X.
0.1321.6PtpAffx.121406.1.A1_s_atAt1g52360hypothetical protein-2e+0At5g45790ubiquitin thiolesteraseO.I.H.G.S.X.
0.1219.6PtpAffx.32788.1.S1_atAt1g52360--1e+0At5g58390peroxidase, putativeO.I.H.G.S.X.
0.1219.6PtpAffx.43228.1.A1_atAt1g52360--1e+0At3g28620zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1219.6Ptp.7724.1.S1_atAt1g52360--1e+0At3g28420unknown proteinO.I.H.G.S.X.
0.1118.1PtpAffx.20634.4.S1_a_atAt1g52360hypothetical protein-5e-3At2g41420proline-rich family proteinO.I.H.G.S.X.
0.1118.1PtpAffx.202362.1.S1_atAt1g52360hypothetical protein-5e-3At3g09760zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1118.1PtpAffx.209082.1.S1_atAt1g52360--2e-2At4g30170peroxidase, putativeO.I.H.G.S.X.
0.1118.1Ptp.7417.2.A1_atAt1g52360--1e-7At4g24570mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.1016.3PtpAffx.214831.1.S1_atAt1g52360hypothetical protein-2e-2At3g15390SDE5 (silencing defective 5)O.I.H.G.S.X.
0.1016.3PtpAffx.157126.1.S1_atAt1g52360hypothetical protein-7e+0At4g37925NDH-M (subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex)O.I.H.G.S.X.
0.0914.6Ptp.3306.1.S1_atAt1g52360--3e+0At1g17280UBC34 (ubiquitin-conjugating enzyme 34)O.I.H.G.S.X.
0.0914.6PtpAffx.225458.1.S1_atAt1g52360hypothetical protein-1e-21At5g45160root hair defective 3 GTP-binding (RHD3) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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