Co-expression analysis

Gene ID Zm.15846.1.A1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g52360: coatomer protein complex, subunit beta 2 (beta prime), putative (HF=1e-4)
Module size 6 genes
NF 0.61
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.9199.00.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.6077.80.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.6077.80.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.4352.80.99RPTR-Zm-M10961-2_atRPTR-Zm-M10961-2---O.I.H.G.S.X.
0.2724.60.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
8.098.0GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.697.9GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.297.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0209100, orthologous to the query gene, Zm.15846.1.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6987.9Os02g0209100At1g52360-Coatomer WD associated region domain containingprotein5e-9At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.7289.8Os03g0112400At1g52360-AP2 adaptor, appendage domain containing protein5e-2At5g22770alpha-ADR (alpha-adaptin)O.I.H.G.S.X.
0.7189.6Os05g0556100At1g52360-SDL5A1e-43At3g61760ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)O.I.H.G.S.X.
0.6583.8Os03g0265700At1g52360-SH3 domain containing protein6e-50At2g07360SH3 domain-containing proteinO.I.H.G.S.X.
0.6483.4Os03g0227000At1g52360-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.6483.4Os02g0537900At1g52360-Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1)5e-87At1g16780vacuolar-type H+-translocating inorganic pyrophosphatase, putativeO.I.H.G.S.X.
0.6281.5Os04g0502200At1g52360-Conserved hypothetical protein1e-7At5g11040-O.I.H.G.S.X.
0.6181.2Os07g0657200At1g52360-WD40-like domain containing protein3e-8At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.5978.0Os03g0355600At1g52360-Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B0At4g23460beta-adaptin, putativeO.I.H.G.S.X.
0.5877.0Os05g0230600At1g52360-WD40-like domain containing protein1e-7At5g11560catalyticO.I.H.G.S.X.
0.5676.3Os02g0690700At1g52360-Clathrin adaptor complex, medium chain familyprotein3e+0At1g19770ATPUP14O.I.H.G.S.X.
0.4964.4Os02g0297600At1g52360-Protein of unknown function DUF707 family protein8e-20At1g67850unknown proteinO.I.H.G.S.X.
0.4863.7Os12g0104800At1g52360--2e-138At3g08530clathrin heavy chain, putativeO.I.H.G.S.X.
0.4458.1Os01g0253100At1g52360-Pto kinase interactor 16e-12At4g02010protein kinase family proteinO.I.H.G.S.X.
0.3948.3Os04g0129500At1g52360-Sec23/Sec24 zinc finger domain containing protein7e-31At3g07100protein transport protein Sec24, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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