Co-expression analysis

Gene ID Zm.15846.1.A1_s_at
Gene name
Homology with ArabidopsisSimilar to At1g52360: coatomer protein complex, subunit beta 2 (beta prime), putative (HF=1e-4)
Module size 6 genes
NF 0.61
%ile 82.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.15846.1.A1_s_atAA979796--1e-4At1g52360coatomer protein complex, subunit beta 2 (beta prime), putativeO.I.H.G.S.X.
0.9199.00.99Zm.15845.1.S1_atCF244242hypothetical protein LOC100216966-5e+0At3g10850GLY2O.I.H.G.S.X.
0.6077.80.99Zm.3044.2.A1_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.6077.80.99Zm.3044.2.S1_a_atAI881563--8e-1At1g59835unknown proteinO.I.H.G.S.X.
0.4352.80.99RPTR-Zm-M10961-2_atRPTR-Zm-M10961-2---O.I.H.G.S.X.
0.2724.60.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.898.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
8.098.0GSM253281ZM_8d_SG200_3Alu_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.697.9GSM253280ZM_8d_SG200_3Alu_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
7.297.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g52360, orthologous to the query gene, Zm.15846.1.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g52360841666coatomer protein complex, subunit beta 2 (beta prime), putativeF:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, COPI vesicle coat;MFOBPAVO.I.H.G.S.X.
0.4659.8At1g31730840060epsilon-adaptin, putativeF:protein binding, clathrin binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat;OMFPBVO.I.H.G.S.X.
0.4659.8At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.4457.2At1g71820843512SEC6F:molecular_function unknown;P:pollen germination, pollen tube growth;C:plasma membrane, exocyst;MFOPBAO.I.H.G.S.X.
0.4355.3At5g39500833946pattern formation protein, putativeF:ARF guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBO.I.H.G.S.X.
0.4253.9At3g10380820201SEC8 (SUBUNIT OF EXOCYST COMPLEX 8)Subunit of the Putative Arabidopsis Exocyst ComplexO.I.H.G.S.X.
0.4152.4At3g15980820842coatomer protein complex, subunit beta 2 (beta prime), putativeF:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, COPI vesicle coat;MFOBPAO.I.H.G.S.X.
0.4152.4At3g63460825521WD-40 repeat family proteinF:molecular_function unknown;P:unknown;C:CUL4 RING ubiquitin ligase complex, membrane;MFOBPVAO.I.H.G.S.X.
0.4152.4At4g31480829275coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFPO.I.H.G.S.X.
0.4152.4At2g28520817400VHA-A1 (VACUOLAR PROTON ATPASE A 1)Vacuolar proton ATPase subunit VHA-a isoform 1. Localized in the trans-Golgi network.O.I.H.G.S.X.
0.4050.8At1g77140844050VPS45 (VACUOLAR PROTEIN SORTING 45)A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face.O.I.H.G.S.X.
0.3948.4At4g00570828222malate oxidoreductase, putativeF:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:oxidation reduction, malate metabolic process, metabolic process;C:mitochondrion, chloroplast;BOMPFAO.I.H.G.S.X.
0.3948.4At5g22770832340alpha-ADR (alpha-adaptin)F:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane, membrane;MOFPO.I.H.G.S.X.
0.3846.7At3g58580825027hydrolaseF:hydrolase activity;P:unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.3846.7At3g50590824223nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:plasma membrane;MBFOPVO.I.H.G.S.X.
0.3643.6At5g06600830548UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.3541.6At2g05170815065ATVPS11Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.3439.8At2g38950818480transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:nucleus;MFPOO.I.H.G.S.X.
0.3338.1At1g27600839652glycosyl transferase family 43 proteinF:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.H.G.S.X.
0.3338.1At5g18190831937protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.3338.1At2g26140817154ftsh4 (FtsH protease 4)encodes an FtsH protease that is localized to the mitochondrionO.I.H.G.S.X.
0.3235.7At1g27850839678unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOFBPVAO.I.H.G.S.X.
0.3235.7At5g35430833507bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.H.G.S.X.
0.3235.7At5g32470833206-F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;BOFAPMO.I.H.G.S.X.
0.3032.1At3g01460821132MBD9Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes.O.I.H.G.S.X.
0.3032.1At3g06340819808DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.H.G.S.X.
0.2930.3At3g07100819896protein transport protein Sec24, putativeF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFBOPVAO.I.H.G.S.X.
0.2930.3At3g08530820001clathrin heavy chain, putativeF:protein binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane, chloroplast, membrane;MOFPBO.I.H.G.S.X.
0.2930.3At1g10950837638endomembrane protein 70, putativeF:unknown;P:unknown;C:integral to membrane, Golgi apparatus, membrane;MPOFBO.I.H.G.S.X.
0.2830.3At1g76850844020SEC5A (EXOCYST COMPLEX COMPONENT SEC5)F:molecular_function unknown;P:pollen germination, pollen tube growth;C:cytosol, plasma membrane;MFPOVBO.I.H.G.S.X.
0.2830.3At3g22170821781FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1.O.I.H.G.S.X.
0.2830.3At5g58100835922unknown proteinF:unknown;P:pollen exine formation;C:unknown;POABO.I.H.G.S.X.
0.2726.2At1g21630838765calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:cytosol, plasma membrane;BMOFPVAO.I.H.G.S.X.
0.2726.2At1g79990844339protein binding / structural moleculeF:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MFOBPAVO.I.H.G.S.X.
0.2624.4At5g41480834149GLA1 (GLOBULAR ARREST1)Encodes a dihydrofolate synthetase based on yeast complementation experiments. This protein is involved in folate biosynthesis.O.I.H.G.S.X.
0.2624.4At5g57460835851unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, chloroplast;MPOFO.I.H.G.S.X.
0.2624.4At3g55480824714adaptin family proteinF:protein binding, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system;BMFOPO.I.H.G.S.X.
0.2522.6At2g25760817118protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MBOPFVAO.I.H.G.S.X.
0.2420.7At5g28850833004calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPFO.I.H.G.S.X.
0.2420.7At5g21040832228FBX2 (F-BOX PROTEIN 2)Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.O.I.H.G.S.X.
0.2420.7At1g54390841881PHD finger protein-relatedING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.2319.3At4g38500830007unknown proteinF:unknown;P:unknown;C:Golgi apparatus;POBAO.I.H.G.S.X.
0.2319.3At1g18070838387EF-1-alpha-related GTP-binding protein, putativeF:translation factor activity, nucleic acid binding, GTP binding, translation release factor activity, GTPase activity;P:translational termination;C:vacuole;BMOFPAO.I.H.G.S.X.
0.2217.5At4g32120829344galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:membrane;PMOO.I.H.G.S.X.
0.2014.4At1g26370839179RNA helicase, putativeF:in 6 functions;P:biological_process unknown;C:chloroplast;MBOFVPAO.I.H.G.S.X.
0.2014.4At1g24706839081unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVAO.I.H.G.S.X.
0.2014.4At2g46560819268transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;BFMOPO.I.H.G.S.X.
0.1811.4At3g56150824781EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C)member of eIF3c - eukaryotic initiation factor 3cO.I.H.G.S.X.
0.1710.2At1g07140837225SIRANBPEncodes a putative Ran-binding protein (siRanBP).O.I.H.G.S.X.
0.1710.2At4g30890829213UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24)Encodes a ubiquitin-specific protease.O.I.H.G.S.X.
0.1710.2At2g34970818061eIF4-gamma/eIF5/eIF2-epsilon domain-containing proteinF:binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity;P:biosynthetic process, regulation of translational initiation;C:unknown;BOMAFPO.I.H.G.S.X.
0.092.8At4g24330828536unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MFOPBO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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