Co-expression analysis

Gene ID	Zm.1575.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g25820: transcription factor (HF=6e+0)
Module size	19 genes
NF	0.46
%ile	55.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.97	Zm.1575.1.A1_at	BM073224	-	-	6e+0	At2g25820	transcription factor	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.98	ZmAffx.525.1.A1_at	AI711680	-	-	8e-1	At5g23170	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.11328.1.A1_at	CA401316	hypothetical protein LOC100274553	-	6e+0	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	ZmAffx.1087.1.S1_s_at	AW036957	herbicide safener binding protein1	-	5e+0	At4g19690	IRT1 (iron-regulated transporter 1)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.18084.1.A1_at	CD997940	-	-	8e-7	At1g16870	mitochondrial 28S ribosomal protein S29-related	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.99	Zm.11338.1.A1_at	BM349130	hypothetical protein LOC100274516	-	3e-6	At2g40190	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.98	ZmAffx.531.1.A1_at	AI711719	-	-	8e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.5230.1.A1_at	CA404914	acyl-desaturase	-	2e-17	At2g43710	SSI2	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	ZmAffx.732.1.A1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.99	Zm.18038.1.S1_at	CD219308	-	-	2e+1	At5g66700	HB53	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.99	Zm.1134.1.A1_at	AY112160.1	hypothetical protein LOC100193278	-	3e+0	At2g26940	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.17270.5.A1_at	AI664860	-	-	3e-1	At4g00940	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.16316.1.A1_at	CF244157	ATP binding protein	-	2e-1	At5g19210	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.98	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.99	Zm.5115.1.A1_at	AI600917	hypothetical protein LOC100272658	-	2e-46	At3g20290	ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.1230.1.A1_at	CA403072	hypothetical protein LOC100191965	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.18109.1.S1_at	AI881274	-	-	3e+0	At4g23340	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.99	Zm.8600.1.S1_at	AY107085.1	-	-	6e-2	At5g52200	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.5	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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