Co-expression analysis

Gene ID	Zm.15683.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g27435: unknown protein (HF=2e-2)
Module size	6 genes
NF	0.47
%ile	57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.96	Zm.15683.1.A1_at	CD440363	-	-	2e-2	At1g27435	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.16805.6.S1_x_at	BG320419	ADP-ribosylation factor 1	-	2e-99	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.96	Zm.6480.2.S1_at	AI065715	-	-	1e-11	At5g64200	ATSC35	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.10380.1.S1_at	AY109011.1	hypothetical protein LOC100216776	-	8e-7	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.14760.1.A1_at	AY104289.1	Ubiquitin-conjugating enzyme E2	-	2e+0	At2g13980	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.6848.1.A1_s_at	AI615252	elongation factor 1-gamma 2	-	9e-47	At1g57720	elongation factor 1B-gamma, putative / eEF-1B gamma, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
22.6	99.5	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
13.9	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL638Contig1_at, orthologous to the query gene, Zm.15683.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.1	PsAffx.CL638Contig1_at	At1g27435	-	-	2e+1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.C68000059_at	At1g27435	-	-	2e-5	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.33	46.1	PsAffx.CL869Contig1_at	At1g27435	-	-	2e+0	At3g06145	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	PsAffx.C173000014_at	At1g27435	-	-	3e-1	At2g45800	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	PsAffx.C106000006_at	At1g27435	-	-	3e-1	At1g77960	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.9	PsAffx.CL1226Contig1_at	At1g27435	-	-	2e+0	At1g12440	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.	Please select
0.18	22.3	PsAffx.CL666Contig1_at	At1g27435	-	-	2e+0	At4g28840	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	21.2	PsAffx.CL286Contig1_at	At1g27435	-	-	5e+0	At2g02590	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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