CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.15626.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g66510: GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) (HF=1e-8)

Module size 6 genes

NF 0.82

%ile 98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.84 Zm.15626.1.S1_at CA404507 - - 1e-8 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) O.I. H.G. S.X.
0.83 95.6 0.86 Zm.7720.1.S1_at CK347322 - - 2e-10 At2g21630 transport protein, putative O.I. H.G. S.X.
0.77 92.1 0.85 Zm.17158.3.A1_at BM078932 - - 4e+0 At3g08920 rhodanese-like domain-containing protein O.I. H.G. S.X.
0.77 92.1 0.86 Zm.3864.1.A1_at AY106452.1 calmodulin2 - 8e-80 At3g56800 CAM3 (CALMODULIN 3) O.I. H.G. S.X.
0.73 89.9 0.86 Zm.12573.1.A1_a_at BI233467 hypothetical protein LOC100192765 /// hypothetical protein LOC100276406 - 2e+0 At3g20450 - O.I. H.G. S.X.
0.67 85.8 0.84 Zm.2376.7.A1_at BM079913 - - 2e-2 At5g60370 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.6 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the grape gene, 1608449_at, orthologous to the query gene, Zm.15626.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 80.6 1608449_at At5g66510 hypothetical protein LOC100247109 - 6e-72 At1g19580 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1) O.I. H.G. S.X.
0.57 79.8 1608703_at At5g66510 ubiquitin-activating enzyme - 1e-24 At5g06460 ATUBA2 O.I. H.G. S.X.
0.55 77.3 1615735_at At5g66510 hypothetical protein LOC100259271 - 0 At1g50370 serine/threonine protein phosphatase, putative O.I. H.G. S.X.
0.49 69.3 1622378_s_at At5g66510 hypothetical protein LOC100252146 - 5e-10 At5g54855 pollen Ole e 1 allergen and extensin family protein O.I. H.G. S.X.
0.47 67.7 1616861_s_at At5g66510 hypothetical protein LOC100244246 - 9e-11 At4g17720 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.44 64.1 1620906_s_at At5g66510 hypothetical protein LOC100246670 - 2e+0 At1g32630 unknown protein O.I. H.G. S.X.
0.41 58.7 1616941_at At5g66510 hypothetical protein LOC100248410 - 2e-39 At1g07830 ribosomal protein L29 family protein O.I. H.G. S.X.
0.39 54.9 1607275_at At5g66510 hypothetical protein LOC100261812 - 7e-13 At3g15980 coatomer protein complex, subunit beta 2 (beta prime), putative O.I. H.G. S.X.
0.35 48.5 1614840_at At5g66510 hypothetical protein LOC100248036 - 2e-56 At1g10840 TIF3H1 O.I. H.G. S.X.
0.33 45.7 1612039_at At5g66510 hypothetical protein LOC100266651 - 1e-18 At2g03870 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.
0.31 41.3 1621991_at At5g66510 hypothetical protein LOC100243393 - 1e-1 At2g41060 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.30 39.4 1614599_at At5g66510 hypothetical protein LOC100248579 - 1e-25 At4g01810 protein transport protein-related O.I. H.G. S.X.
0.30 39.4 1618577_at At5g66510 hypothetical protein LOC100257605 - 5e-7 At2g03290 protein transmembrane transporter O.I. H.G. S.X.
0.29 37.7 1614946_at At5g66510 hypothetical protein LOC100258219 - 8e-64 At4g24820 26S proteasome regulatory subunit, putative (RPN7) O.I. H.G. S.X.
0.25 30.5 1610373_at At5g66510 hypothetical protein LOC100242638 - 1e-20 At2g26210 ankyrin repeat family protein O.I. H.G. S.X.
0.20 22.4 1617936_at At5g66510 similar to 26S proteasome subunit RPN5b - 3e-23 At5g64760 RPN5B (REGULATORY PARTICLE NON-ATPASE SUBUNIT 5B) O.I. H.G. S.X.
0.19 20.9 AFFX-Vvi-actin-5_at At5g66510 actin 1 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

Back to the CoP portal site

Back to the KAGIANA project homepage