Co-expression analysis

Gene ID	Zm.15626.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g66510: GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) (HF=1e-8)
Module size	6 genes
NF	0.82
%ile	98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.84	Zm.15626.1.S1_at	CA404507	-	-	1e-8	At5g66510	GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.86	Zm.7720.1.S1_at	CK347322	-	-	2e-10	At2g21630	transport protein, putative	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.85	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.86	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.86	Zm.12573.1.A1_a_at	BI233467	hypothetical protein LOC100192765 /// hypothetical protein LOC100276406	-	2e+0	At3g20450	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.84	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.59244.1.S1_at, orthologous to the query gene, Zm.15626.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.59244.1.S1_at	At5g66510	-	-	2e-14	At1g19580	GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.26385.1.A1_at	At5g66510	-	-	2e-15	At3g55770	LIM domain-containing protein	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.14305.1.A1_at	At5g66510	-	-	2e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.3478.3.S1_x_at	At5g66510	-	-	2e-11	At1g69670	CUL3B (CULLIN 3B)	O.I.	H.G.	S.X.	Please select
0.10	11.3	TaAffx.8469.1.S1_at	At5g66510	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.31791.1.S1_at	At5g66510	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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