CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.15626.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g66510: GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) (HF=1e-8)

Module size 6 genes

NF 0.82

%ile 98.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.84 Zm.15626.1.S1_at CA404507 - - 1e-8 At5g66510 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) O.I. H.G. S.X.
0.83 95.6 0.86 Zm.7720.1.S1_at CK347322 - - 2e-10 At2g21630 transport protein, putative O.I. H.G. S.X.
0.77 92.1 0.85 Zm.17158.3.A1_at BM078932 - - 4e+0 At3g08920 rhodanese-like domain-containing protein O.I. H.G. S.X.
0.77 92.1 0.86 Zm.3864.1.A1_at AY106452.1 calmodulin2 - 8e-80 At3g56800 CAM3 (CALMODULIN 3) O.I. H.G. S.X.
0.73 89.9 0.86 Zm.12573.1.A1_a_at BI233467 hypothetical protein LOC100192765 /// hypothetical protein LOC100276406 - 2e+0 At3g20450 - O.I. H.G. S.X.
0.67 85.8 0.84 Zm.2376.7.A1_at BM079913 - - 2e-2 At5g60370 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.6 98.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g66510, orthologous to the query gene, Zm.15626.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.50 65.3 At5g66510 836783 GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. O.I. H.G. S.X.
0.80 89.8 At3g02090 821084 mitochondrial processing peptidase beta subunit, putative F:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:in 11 components;BOMFPAV O.I. H.G. S.X.
0.75 86.9 At2g20360 816555 binding / catalytic/ coenzyme binding F:coenzyme binding, binding, catalytic activity;P:response to salt stress;C:mitochondrion, respiratory chain complex I, membrane;BOMFPA O.I. H.G. S.X.
0.75 86.9 At5g37510 833729 EMB1467 (embryo defective 1467) Encodes a subunit of the 400 kDa subcomplex of the mitochondrial NADH dehydrogenase (complex I). The protein has been isolated in the male gametophyte. O.I. H.G. S.X.
0.57 73.8 At3g27240 822343 cytochrome c1, putative F:electron carrier activity, iron ion binding, heme binding, electron transporter, transferring electrons within CoQH2-cytochrome c reductase complex activity;P:unknown;C:in 6 components;OBMFP O.I. H.G. S.X.
0.44 57.2 At1g47260 841129 GAMMA CA2 (GAMMA CARBONIC ANHYDRASE 2) Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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