Co-expression analysis

Gene ID Zm.15576.1.A1_a_at
Gene name
Homology with ArabidopsisSimilar to At5g01860: zinc finger (C2H2 type) family protein (HF=3e-1)
Module size 11 genes
NF 0.54
%ile 70.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.4149.70.96Zm.15576.1.A1_a_atCK827910--3e-1At5g01860zinc finger (C2H2 type) family proteinO.I.H.G.S.X.
0.7389.90.97Zm.749.1.S1_atAY291061.1photosystem II subunit PsbS1-8e-7At1g44575NPQ4 (NONPHOTOCHEMICAL QUENCHING)O.I.H.G.S.X.
0.7288.60.97Zm.17497.1.A1_atBG266429hypothetical protein LOC100273930-3e+0Atmg00140-O.I.H.G.S.X.
0.6077.80.98Zm.6049.1.A1_atAY103705.1--1e-1At5g02400PLL2O.I.H.G.S.X.
0.6077.80.98Zm.6049.3.A1_a_atAI734480phosphatidylinositol transporter/ transporter-3e-3At1g76640calmodulin-related protein, putativeO.I.H.G.S.X.
0.5775.10.97Zm.2258.1.A1_atAY112615.1--1e+0At3g49570LSU3 (RESPONSE TO LOW SULFUR 3)O.I.H.G.S.X.
0.5065.70.97Zm.2134.1.A1_atAI734434--9e-2At2g41780unknown proteinO.I.H.G.S.X.
0.4961.90.97Zm.18446.1.A1_atCO518758--3e-2At1g29800phosphoinositide binding / zinc ion bindingO.I.H.G.S.X.
0.4455.70.98Zm.18416.1.A1_atCO524449hypothetical protein LOC100193203-3e-1At3g27900unknown proteinO.I.H.G.S.X.
0.3742.30.97Zm.13681.1.S1_atAY106895.1hypothetical protein LOC100191679-4e-10At1g12370PHR1 (PHOTOLYASE 1)O.I.H.G.S.X.
0.3641.30.98Zm.6146.1.A1_atCD989568brassinosteroid biosynthesis-like protein-1e-40At3g19820DWF1 (DWARF 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
16.099.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.098.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.198.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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