Co-expression analysis

Gene ID	Zm.15516.1.S1_at
Gene name	hypothetical protein LOC100279678
Homology with Arabidopsis	Similar to At1g60140: ATTPS10 (trehalose phosphate synthase) (HF=2e+0)
Module size	23 genes
NF	0.32
%ile	30.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	92.8	0.96	Zm.15516.1.S1_at	CK787189	hypothetical protein LOC100279678	-	2e+0	At1g60140	ATTPS10 (trehalose phosphate synthase)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.2668.1.A1_at	CB334210	hypothetical protein LOC100193351	-	4e+0	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.2976.1.S1_at	AF045033.1	nitrate-induced NOI protein	-	2e-3	At2g04410	-	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.4125.1.A1_at	BM378950	stachyose synthase	-	1e+0	At1g32583	-	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.10123.1.S1_at	BM380717	heat- and acid-stable phosphoprotein	-	3e-14	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.9926.1.A1_at	CA401778	-	-	7e-1	At4g15790	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.98	Zm.6239.1.S1_a_at	BG841075	hypothetical protein LOC100274136	-	3e-18	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.5133.1.S1_at	CO526428	hypothetical protein LOC100273486	-	2e-1	At1g01710	acyl-CoA thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.19158.2.S1_at	BM073998	thioredoxin F-type	-	3e-11	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.16892.2.A1_at	CA403833	-	-	3e-6	At3g09710	IQD1 (IQ-DOMAIN 1)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.17742.1.A1_at	AW042536	hypothetical protein LOC100279932	-	6e-9	At5g51220	ubiquinol-cytochrome C chaperone family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.97	Zm.4640.1.A1_at	CF623843	KH domain containing protein	-	3e+0	At2g31085	CLE6 (CLAVATA3/ESR-RELATED 6)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.98	Zm.12890.1.S1_at	CA401159	BES1/BZR1 protein	-	2e+0	At2g17420	NTRA (NADPH-DEPENDENT THIOREDOXIN REDUCTASE A)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.14411.1.A1_a_at	AI491646	membrane steroid-binding protein 1	-	7e-16	At3g48890	ATMP2	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	Zm.19357.1.A1_at	CO533449	pre-mRNA cleavage complex II protein Clp1	-	2e+0	At2g38465	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.1367.1.S1_at	AW927560	-	-	3e-7	At3g13857	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.2906.1.S1_at	AY110115.1	somatic embryogenesis receptor-like kinase2	-	2e-51	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	ZmAffx.1149.1.A1_at	AW424528	-	-	3e+0	At3g07930	HhH-GPD base excision DNA repair family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	ZmAffx.732.1.A1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.10389.1.A1_at	AY095207.1	glycine-rich protein GRP5	-	4e-1	At5g17650	glycine/proline-rich protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.98	Zm.1360.1.S1_x_at	AW927383	hypothetical protein LOC100276510	-	6e-1	At4g27890	nuclear movement family protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.98	Zm.17015.1.S1_at	CO532022	hypothetical protein LOC100280074	-	4e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
10.0	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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