CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.1551.1.A1_at

Gene name peptidyl-prolyl cis-trans isomerase 1
Homology with Arabidopsis Similar to At2g18040: PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) (HF=6e-3)

Module size 6 genes

NF 0.49

%ile 62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 79.5 0.97 Zm.1551.1.A1_at BM339714 peptidyl-prolyl cis-trans isomerase 1 - 6e-3 At2g18040 PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) O.I. H.G. S.X.
0.61 79.5 0.97 Zm.16994.2.A1_a_at CF972506 methionine synthase - 2e-82 At5g17920 ATMS1 O.I. H.G. S.X.
0.57 75.1 0.97 Zm.3747.1.S1_at BM267525 - - 3e-1 At2g42930 glycosyl hydrolase family protein 17 O.I. H.G. S.X.
0.56 74.4 0.97 Zm.15510.1.A1_at CD441066 mitochondrial carrier YMR166C - 2e-7 At1g74240 mitochondrial substrate carrier family protein O.I. H.G. S.X.
0.35 38.9 0.97 Zm.8484.1.A1_at CD974829 hypothetical protein LOC100279952 - 9e-2 At5g42100 ATBG_PAP O.I. H.G. S.X.
0.26 22.7 0.97 Zm.5954.1.A1_at AF464905.1 repressor protein - 1e-11 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.96	Zm.15512.1.S1_at	CD436002	-	-	2e-4	At3g19540	unknown protein	O.I.	H.G.	S.X.
0.67	85.8	0.96	Zm.3186.1.A1_at	CK827152	-	-	4e-4	At5g16070	chaperonin, putative	O.I.	H.G.	S.X.
0.50	65.7	0.94	Zm.2250.1.A1_at	BM378785	hypothetical protein LOC100279535	-	2e+0	At3g14250	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.50	65.7	0.94	Zm.14846.2.A1_x_at	CO518931	-	-	1e+0	At5g62540	UBC3 (ubiquitin-conjugating enzyme 3)	O.I.	H.G.	S.X.
0.50	65.7	0.95	Zm.4207.2.A1_at	AW324649	hypothetical protein LOC100274836	-	2e+0	At1g06120	fatty acid desaturase family protein	O.I.	H.G.	S.X.
0.48	61.3	0.96	Zm.1227.1.S1_at	CK370465	hypothetical protein LOC100191505	-	6e-1	At3g49250	DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)	O.I.	H.G.	S.X.
0.47	59.9	0.95	Zm.3601.1.A1_at	AW018168	-	-	7e+0	At4g26170	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.14541.1.S1_a_at	AY107924.1	agmatine coumaroyltransferase	-	2e+1	At5g18403	-	O.I.	H.G.	S.X.
0.42	51.3	0.96	Zm.16820.1.S1_a_at	AW256125	hypothetical protein LOC100279930	-	9e-60	At2g18450	SDH1-2	O.I.	H.G.	S.X.
0.40	48.5	0.92	Zm.3763.1.S1_at	CO531085	UDP-N-acetylglucosamine transferase subunit alg13	-	5e-2	At4g16710	glycosyltransferase family protein 28	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.6212.1.A1_at	AI677302	-	-	8e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.2347.1.S1_at	AW424529	-	-	3e-11	At1g72300	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.30	29.8	0.94	Zm.14497.5.S1_at	CD440280	-	-	3e-21	At1g07790	HTB1	O.I.	H.G.	S.X.
0.28	28.1	0.92	Zm.3050.3.A1_at	CF630494	-	-	1e+0	At2g43370	U1 small nuclear ribonucleoprotein 70 kDa, putative	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.4236.1.A1_at	AI978036	-	-	5e-11	At1g70610	ATTAP1	O.I.	H.G.	S.X.
0.26	22.7	0.97	Zm.1454.1.A1_at	BG841866	-	-	4e-1	At3g63170	chalcone isomerase	O.I.	H.G.	S.X.
0.25	21.3	0.97	Zm.9389.2.A1_x_at	BQ538340	catalytic/ protein phosphatase type 2C	-	1e+0	Atmg00980	-	O.I.	H.G.	S.X.
0.25	21.3	0.97	Zm.16829.3.A1_at	AY111089.1	-	-	4e+0	At5g55240	caleosin-related family protein / embryo-specific protein, putative	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.0 96.7 GSM320459 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6 96.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320456 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage