Co-expression analysis

Gene ID	Zm.1551.1.A1_at
Gene name	peptidyl-prolyl cis-trans isomerase 1
Homology with Arabidopsis	Similar to At2g18040: PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) (HF=6e-3)
Module size	6 genes
NF	0.49
%ile	62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.97	Zm.1551.1.A1_at	BM339714	peptidyl-prolyl cis-trans isomerase 1	-	6e-3	At2g18040	PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.97	Zm.16994.2.A1_a_at	CF972506	methionine synthase	-	2e-82	At5g17920	ATMS1	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.3747.1.S1_at	BM267525	-	-	3e-1	At2g42930	glycosyl hydrolase family protein 17	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.15510.1.A1_at	CD441066	mitochondrial carrier YMR166C	-	2e-7	At1g74240	mitochondrial substrate carrier family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.8484.1.A1_at	CD974829	hypothetical protein LOC100279952	-	9e-2	At5g42100	ATBG_PAP	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.5954.1.A1_at	AF464905.1	repressor protein	-	1e-11	At3g12480	NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	96.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.30358.1.S1_at, orthologous to the query gene, Zm.1551.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	83.1	TaAffx.30358.1.S1_at	At2g18040	-	-	3e+0	At5g54950	aconitate hydratase-related / citrate hydro-lyase-related / aconitase-related	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.9748.3.S1_at	At2g18040	-	-	1e+0	At1g55928	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.112817.1.S1_at	At2g18040	-	-	1e+0	At5g59480	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.08	9.4	TaAffx.93946.1.S1_at	At2g18040	-	-	5e+0	At5g11600	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	7.6	TaAffx.12897.1.A1_at	At2g18040	-	-	3e-1	At3g22840	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.111067.1.S1_x_at	At2g18040	-	-	4e+0	At2g42130	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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