| Gene ID | Zm.1551.1.A1_at |
| Gene name | peptidyl-prolyl cis-trans isomerase 1 |
| Homology with Arabidopsis | Similar to At2g18040: PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) (HF=6e-3) |
| Module size | 6 genes |
| NF | 0.49 |
| %ile | 62.2 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.61 | 79.5 | 0.97 | Zm.1551.1.A1_at | BM339714 | peptidyl-prolyl cis-trans isomerase 1 | - | 6e-3 | At2g18040 | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) | O.I. | H.G. | S.X. | |
| 0.61 | 79.5 | 0.97 | Zm.16994.2.A1_a_at | CF972506 | methionine synthase | - | 2e-82 | At5g17920 | ATMS1 | O.I. | H.G. | S.X. | |
| 0.57 | 75.1 | 0.97 | Zm.3747.1.S1_at | BM267525 | - | - | 3e-1 | At2g42930 | glycosyl hydrolase family protein 17 | O.I. | H.G. | S.X. | |
| 0.56 | 74.4 | 0.97 | Zm.15510.1.A1_at | CD441066 | mitochondrial carrier YMR166C | - | 2e-7 | At1g74240 | mitochondrial substrate carrier family protein | O.I. | H.G. | S.X. | |
| 0.35 | 38.9 | 0.97 | Zm.8484.1.A1_at | CD974829 | hypothetical protein LOC100279952 | - | 9e-2 | At5g42100 | ATBG_PAP | O.I. | H.G. | S.X. | |
| 0.26 | 22.7 | 0.97 | Zm.5954.1.A1_at | AF464905.1 | repressor protein | - | 1e-11 | At3g12480 | NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 5.0 | 96.7 | GSM320459 | protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.7 | 96.5 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.6 | 96.4 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.5 | 96.3 | GSM320454 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.5 | 96.3 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.4 | 96.2 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.4 | 96.2 | GSM320456 | protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.3 | 96.1 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.0 | 95.8 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 4.0 | 95.8 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.91 | 99.2 | Ptp.5417.2.S1_at | At2g18040 | hypothetical protein | - | 4e-13 | At2g18040 | PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) | O.I. | H.G. | S.X. | |
| 0.35 | 59.7 | PtpAffx.73516.1.S1_at | At2g18040 | hypothetical protein | - | 4e-45 | At5g01410 | RSR4 (REDUCED SUGAR RESPONSE 4) | O.I. | H.G. | S.X. | |
| 0.28 | 50.5 | Ptp.4852.1.A1_s_at | At2g18040 | hypothetical protein | - | 5e-22 | At5g50100 | - | O.I. | H.G. | S.X. | |
| 0.25 | 43.6 | PtpAffx.20151.2.S1_a_at | At2g18040 | hypothetical protein | - | 7e-2 | At3g24100 | - | O.I. | H.G. | S.X. | |
| 0.07 | 11.6 | PtpAffx.7188.1.A1_at | At2g18040 | hypothetical protein | - | 2e+0 | At2g18660 | EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) | O.I. | H.G. | S.X. | |
| 0.02 | 3.6 | Ptp.7047.1.S1_at | At2g18040 | hypothetical protein | - | 3e-2 | At5g07610 | F-box family protein | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Oryza_sativa |
| Triticum_aestivum |
| Vitis_vinifera |
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