Co-expression analysis

Gene ID Zm.1551.1.A1_at
Gene name peptidyl-prolyl cis-trans isomerase 1
Homology with ArabidopsisSimilar to At2g18040: PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1) (HF=6e-3)
Module size 6 genes
NF 0.49
%ile 62.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6179.50.97Zm.1551.1.A1_atBM339714peptidyl-prolyl cis-trans isomerase 1-6e-3At2g18040PIN1AT (PEPTIDYLPROLYL CIS/TRANS ISOMERASE, NIMA-INTERACTING 1)O.I.H.G.S.X.
0.6179.50.97Zm.16994.2.A1_a_atCF972506methionine synthase-2e-82At5g17920ATMS1O.I.H.G.S.X.
0.5775.10.97Zm.3747.1.S1_atBM267525--3e-1At2g42930glycosyl hydrolase family protein 17O.I.H.G.S.X.
0.5674.40.97Zm.15510.1.A1_atCD441066mitochondrial carrier YMR166C-2e-7At1g74240mitochondrial substrate carrier family proteinO.I.H.G.S.X.
0.3538.90.97Zm.8484.1.A1_atCD974829hypothetical protein LOC100279952-9e-2At5g42100ATBG_PAPO.I.H.G.S.X.
0.2622.70.97Zm.5954.1.A1_atAF464905.1repressor protein-1e-11At3g12480NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.096.7GSM320459protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1523Contig1_at, orthologous to the query gene, Zm.1551.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7388.9PsAffx.CL1523Contig1_atAt2g18040--4e+0At4g03270CYCD6O.I.H.G.S.X.
0.8693.0PsAffx.CL1316Contig1_s_atAt2g18040--3e-1At2g27580zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.8291.9PsAffx.CL2458Contig1_atAt2g18040--5e-6At1g4500026S proteasome regulatory complex subunit p42D, putativeO.I.H.G.S.X.
0.8091.5PsAffx.CL887Contig1_atAt2g18040--6e-3At2g46780RNA binding / nucleic acid binding / nucleotide bindingO.I.H.G.S.X.
0.7990.8PsAffx.CL57Contig1_atAt2g18040--6e-4At1g77930DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.7890.6PsAffx.CL643Contig1_atAt2g18040--5e-2At1g62333unknown proteinO.I.H.G.S.X.
0.7187.8PsAffx.psML008xI07f_s_atAt2g18040--6e-1At4g26930MYB97 (myb domain protein 97)O.I.H.G.S.X.
0.6886.4PsAffx.CL414Contig1_atAt2g18040--5e+0At3g15395unknown proteinO.I.H.G.S.X.
0.6886.4PsAffx.psHA009iD02r_s_atAt2g18040--3e+0At1g54095unknown proteinO.I.H.G.S.X.
0.6786.1PsAffx.CL57Contig2_s_atAt2g18040--3e-4At1g77930DNAJ heat shock N-terminal domain-containing proteinO.I.H.G.S.X.
0.6583.8PsAffx.C263000004_atAt2g18040--4e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.6282.1PsAffx.CL87Contig2_s_atAt2g18040--1e+0At1g60010unknown proteinO.I.H.G.S.X.
0.6181.8PsAffx.CL785Contig1_atAt2g18040--1e+1At5g36920unknown proteinO.I.H.G.S.X.
0.6080.7PsAffx.CL188Contig1_atAt2g18040--6e+0At5g13100unknown proteinO.I.H.G.S.X.
0.5778.8PsAffx.CL176Contig1_s_atAt2g18040--4e+0At3g07430emb1990 (embryo defective 1990)O.I.H.G.S.X.
0.5576.3PsAffx.CL1Contig43_s_atAt2g18040--7e-1At1g65445transferase-relatedO.I.H.G.S.X.
0.5474.8PsAffx.CL569Contig1_atAt2g18040--1e-4At5g40580PBB2O.I.H.G.S.X.
0.5374.2PsAffx.CL74Contig1_atAt2g18040--4e-16At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.4766.6GmaAffx.76368.1.A1_s_atAt2g18040--1e+1At5g54067unknown proteinO.I.H.G.S.X.
0.4057.1PsAffx.CL199Contig1_atAt2g18040--2e+0At4g19740catalytic/ cation binding / chitinase/ hydrolase, hydrolyzing O-glycosyl compoundsO.I.H.G.S.X.
0.3853.3PsAffx.CL172Contig1_atAt2g18040--2e+0At4g02840small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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