Co-expression analysis

Gene ID Zm.15486.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g71270: POK (POKY POLLEN TUBE) (HF=7e-20)
Module size 6 genes
NF 0.68
%ile 89.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.15486.2.S1_atAY108982.1--7e-20At1g71270POK (POKY POLLEN TUBE)O.I.H.G.S.X.
0.7389.90.99Zm.12201.1.A1_atBM379502plastid ADP-glucose pyrophosphorylase large subunit-3e-13At5g19220APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)O.I.H.G.S.X.
0.6785.80.98Zm.725.1.A1_atAY107740.1hypothetical protein LOC100193467-7e-14At3g27740CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)O.I.H.G.S.X.
0.6077.80.99Zm.14288.1.A1_atBM348960--1e-37At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.5775.10.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.
0.4251.30.99Zm.6217.1.A1_atBE129797plant-specific domain TIGR01589 family protein-7e-1At1g28600lipase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.498.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM253276ZM_8d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os03g0417900, orthologous to the query gene, Zm.15486.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5371.3Os03g0417900At1g71270-Vps52/Sac2 family protein2e-24At1g71270POK (POKY POLLEN TUBE)O.I.H.G.S.X.
0.6787.2Os09g0408000At1g71270-Conserved hypothetical protein2e-11At3g50590nucleotide bindingO.I.H.G.S.X.
0.4051.1Os07g0564700At1g71270-Hypothetical protein5e-18At3g43300ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7)O.I.H.G.S.X.
0.3846.9Os03g0711400At1g71270-Coatomer alpha subunit4e-79At1g62020coatomer protein complex, subunit alpha, putativeO.I.H.G.S.X.
0.3644.0Os01g0653800At1g71270-WD40-like domain containing protein1e-32At5g24710-O.I.H.G.S.X.
0.1712.6Os05g0592400At1g71270-UV-damaged DNA binding protein3e-45At4g05420DDB1A (DAMAGED DNA BINDING PROTEIN 1A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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