Co-expression analysis

Gene ID Zm.15486.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g71270: POK (POKY POLLEN TUBE) (HF=7e-20)
Module size 6 genes
NF 0.68
%ile 89.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.99Zm.15486.2.S1_atAY108982.1--7e-20At1g71270POK (POKY POLLEN TUBE)O.I.H.G.S.X.
0.7389.90.99Zm.12201.1.A1_atBM379502plastid ADP-glucose pyrophosphorylase large subunit-3e-13At5g19220APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)O.I.H.G.S.X.
0.6785.80.98Zm.725.1.A1_atAY107740.1hypothetical protein LOC100193467-7e-14At3g27740CARA (CARBAMOYL PHOSPHATE SYNTHETASE A)O.I.H.G.S.X.
0.6077.80.99Zm.14288.1.A1_atBM348960--1e-37At1g60780HAP13 (HAPLESS 13)O.I.H.G.S.X.
0.5775.10.99RPTR-Zm-M57289-1_s_atRPTR-Zm-M57289-1---O.I.H.G.S.X.
0.4251.30.99Zm.6217.1.A1_atBE129797plant-specific domain TIGR01589 family protein-7e-1At1g28600lipase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.498.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.397.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM253276ZM_8d_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At1g71270, orthologous to the query gene, Zm.15486.2.S1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At1g71270843468POK (POKY POLLEN TUBE)Encodes a homolog of the yeast Vps52p/SAC2. Involved in pollen tube germination and growth. Located in multiple endomembrane organelles including the golgi. The yeast protein has been shown to be located at the late Golgi and to function in a complex involved in retrograde trafficking of vesicles between the early endosomal compartment and the trans-Golgi network.O.I.H.G.S.X.
0.4457.2At1g79990844339protein binding / structural moleculeF:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MFOBPAVO.I.H.G.S.X.
0.4253.9At2g27460817291sec23/sec24 transport family proteinF:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, vesicle-mediated transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOPBO.I.H.G.S.X.
0.3846.7At3g02710821269nuclear associated protein-related / NAP-relatedEncodes a protein with a putative role in mRNA splicing.O.I.H.G.S.X.
0.3745.0At4g32120829344galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, galactosyltransferase activity;P:protein amino acid glycosylation;C:membrane;PMOO.I.H.G.S.X.
0.3338.1At3g60740825245TTN1 (TITAN 1)Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.O.I.H.G.S.X.
0.3235.7At3g58580825027hydrolaseF:hydrolase activity;P:unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.3133.8At4g24490828551protein prenyltransferaseF:protein prenyltransferase activity;P:response to cadmium ion;C:unknown;MOFBPAVO.I.H.G.S.X.
0.3133.8At2g35100818076ARAD1 (ARABINAN DEFICIENT 1)Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems.O.I.H.G.S.X.
0.3032.1At1g07705837284transcription regulatorF:transcription regulator activity;P:regulation of transcription;C:nucleus, chloroplast;MOBFPVO.I.H.G.S.X.
0.2930.3At5g28850833004calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPFO.I.H.G.S.X.
0.2930.3At2g27900817335unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.2930.3At2g30910817641ARPC1A (ACTIN-RELATED PROTEIN C1A)F:actin binding, nucleotide binding;P:actin filament organization;C:Arp2/3 protein complex, nucleus, cytoplasm;MBFOPAO.I.H.G.S.X.
0.2830.3At5g16280831488unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;MFOPVO.I.H.G.S.X.
0.2830.3At1g08660837388glycosyl transferase family 29 protein / sialyltransferase family proteinF:transferase activity, transferring glycosyl groups, sialyltransferase activity;P:protein amino acid glycosylation;C:Golgi apparatus, membrane;MPOVO.I.H.G.S.X.
0.2726.2At1g80910844431unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.H.G.S.X.
0.2624.4At1g12470837804Pep3/Vps18/deep orange family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MFOPBO.I.H.G.S.X.
0.2624.4At4g31480829275coatomer beta subunit, putative / beta-coat protein, putative / beta-COP, putativeF:protein binding, clathrin binding, structural molecule activity, binding;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MOFPO.I.H.G.S.X.
0.2522.6At5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.O.I.H.G.S.X.
0.2420.7At4g33650829506DRP3A (DYNAMIN-RELATED PROTEIN 3A)Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Localizes to the chloroplast, mitochondrion and peroxisome. Involved in peroxisome and mitochondria fission in combination with DRP3B.O.I.H.G.S.X.
0.2319.3At5g27970832867bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPBO.I.H.G.S.X.
0.2319.3At1g67930843121Golgi transport complex protein-relatedF:unknown;P:unknown;C:chloroplast;OMFBPVO.I.H.G.S.X.
0.2014.4At1g77140844050VPS45 (VACUOLAR PROTEIN SORTING 45)A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face.O.I.H.G.S.X.
0.2014.4At3g05420819707ACBP4 (ACYL-COA BINDING PROTEIN 4)Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport.O.I.H.G.S.X.
0.1912.7At2g41350818733unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBO.I.H.G.S.X.
0.1811.4At3g51310824294VPS35C (VPS35 HOMOLOG C)Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport.O.I.H.G.S.X.
0.1811.4At1g04910839373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.1710.2At3g12990820485RRP45a (Ribonuclease PH45a)Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis.O.I.H.G.S.X.
0.124.9At3g59990825169MAP2B (METHIONINE AMINOPEPTIDASE 2B)Encodes a MAP2 like methionine aminopeptidaseO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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