CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.15443.1.S1_at

Gene name hypothetical protein LOC100276706
Homology with Arabidopsis Similar to At3g54085: - (HF=1e-3)

Module size 6 genes

NF 0.47

%ile 59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.95 Zm.15443.1.S1_at CD484762 hypothetical protein LOC100276706 - 1e-3 At3g54085 - O.I. H.G. S.X.
0.57 75.1 0.96 Zm.886.2.S1_at CK827386 - - 5e-2 At2g39050 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.55 71.6 0.96 Zm.3731.1.A1_at BM339633 hypothetical protein LOC100194030 - 6e+0 At5g60950 COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR) O.I. H.G. S.X.
0.50 65.7 0.97 Zm.9152.1.A1_at BM267500 - - 4e+0 At1g65484 unknown protein O.I. H.G. S.X.
0.33 36.0 0.96 Zm.5172.1.A1_at BM266341 - - 1e-1 At1g79960 OFP14 (OVATE FAMILY PROTEIN 14) O.I. H.G. S.X.
0.21 15.5 0.96 Zm.17587.1.S1_at CK369775 hypothetical protein LOC100193716 /// hypothetical protein LOC100276274 - 5e+0 At5g67420 LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.92	Zm.12755.1.A1_at	CO533266	-	-	4e-1	At2g42130	unknown protein	O.I.	H.G.	S.X.
0.46	58.4	0.94	Zm.15161.1.S1_at	CO519231	-	-	2e+1	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.
0.44	55.7	0.95	Zm.17676.1.S1_at	CK369571	plant-specific domain TIGR01627 family protein	-	1e+1	At4g00280	-	O.I.	H.G.	S.X.
0.43	52.8	0.95	Zm.573.1.A1_at	AF131201.1	plasma membrane MIP protein	-	3e-37	At3g61430	PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A)	O.I.	H.G.	S.X.
0.43	52.8	0.96	Zm.14508.1.S1_at	BM349650	-	-	2e-7	At1g22620	ATSAC1 (suppressor of actin 1)	O.I.	H.G.	S.X.
0.36	41.3	0.92	Zm.2863.1.A1_at	CO524360	hypothetical protein LOC100272951 /// hypothetical protein LOC100279954	-	4e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	O.I.	H.G.	S.X.
0.36	41.3	0.95	Zm.14270.3.A1_x_at	CK368888	Hypothetical protein LOC100216603	-	3e-1	At5g66980	transcriptional factor B3 family protein	O.I.	H.G.	S.X.
0.36	41.3	0.96	Zm.18898.1.A1_at	CO530921	hypothetical protein LOC100279401	-	7e+0	At4g40045	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.90	Zm.17541.1.S1_at	CK369131	charged multivesicular body protein 2a	-	2e-43	At5g44560	VPS2.2	O.I.	H.G.	S.X.
0.29	28.1	0.94	Zm.12786.1.A1_at	CA398792	Brittle stalk-2-like protein 6	-	4e+0	At3g02210	COBL1 (COBRA-LIKE PROTEIN 1 PRECURSOR)	O.I.	H.G.	S.X.
0.29	28.1	0.96	Zm.6067.2.A1_at	CA401344	hypothetical protein LOC100277938	-	9e-4	At1g22990	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.12101.2.A1_at	AI833552	-	-	4e+0	At4g34412	-	O.I.	H.G.	S.X.
0.27	24.6	0.97	Zm.1129.1.A1_at	BE510577	-	-	1e+0	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	O.I.	H.G.	S.X.
0.25	21.3	0.91	Zm.19019.1.A1_at	BM080703	hypothetical protein LOC100276837	-	2e+0	At5g54850	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.92	Zm.12953.1.A1_x_at	CD444066	-	-	4e+0	At5g25570	unknown protein	O.I.	H.G.	S.X.
0.25	21.3	0.93	Zm.15719.1.S1_at	CK145160	hypothetical protein LOC100274226	-	8e-1	At2g39760	BPM3	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.1 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8 97.9 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3 97.8 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3 97.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4 97.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2 97.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0 90.2 GSM205376 B73xMo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage