Co-expression analysis

Gene ID	Zm.15443.1.S1_at
Gene name	hypothetical protein LOC100276706
Homology with Arabidopsis	Similar to At3g54085: - (HF=1e-3)
Module size	6 genes
NF	0.47
%ile	59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.95	Zm.15443.1.S1_at	CD484762	hypothetical protein LOC100276706	-	1e-3	At3g54085	-	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.96	Zm.886.2.S1_at	CK827386	-	-	5e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.3731.1.A1_at	BM339633	hypothetical protein LOC100194030	-	6e+0	At5g60950	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.9152.1.A1_at	BM267500	-	-	4e+0	At1g65484	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.5172.1.A1_at	BM266341	-	-	1e-1	At1g79960	OFP14 (OVATE FAMILY PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.96	Zm.17587.1.S1_at	CK369775	hypothetical protein LOC100193716 /// hypothetical protein LOC100276274	-	5e+0	At5g67420	LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.1	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the barley gene, Contig8283_at, orthologous to the query gene, Zm.15443.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	Contig8283_at	At3g54085	-	-	3e-1	At2g28105	-	O.I.	H.G.	S.X.	Please select
0.77	90.8	Contig11079_at	At3g54085	-	-	9e-9	At3g26420	ATRZ-1A	O.I.	H.G.	S.X.	Please select
0.67	84.7	EBpi05_SQ001_N05_at	At3g54085	-	-	3e+0	At2g29654	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	84.7	Contig2517_s_at	At3g54085	-	-	2e-6	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.60	77.3	HC112D12_T3_at	At3g54085	-	-	7e+0	At4g34881	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	HVSMEa0008P17r2_at	At3g54085	-	-	4e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig23178_at	At3g54085	-	-	1e+0	At5g55570	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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