CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.15437.1.S1_at

Gene name hypothetical protein LOC100191830
Homology with Arabidopsis Similar to At5g37670: 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) (HF=6e+0)

Module size 6 genes

NF 0.61

%ile 82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.0 0.97 Zm.15437.1.S1_at CD219447 hypothetical protein LOC100191830 - 6e+0 At5g37670 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) O.I. H.G. S.X.
0.57 75.1 0.98 ZmAffx.757.1.A1_at AI745972 - - 3e+0 At4g32960 unknown protein O.I. H.G. S.X.
0.55 71.6 0.98 ZmAffx.834.1.A1_at AI770566 - - 8e-1 At1g54420 unknown protein O.I. H.G. S.X.
0.50 65.7 0.97 Zm.15414.1.A1_at CD435566 - - 5e+0 At4g01170 unknown protein O.I. H.G. S.X.
0.46 58.4 0.98 Zm.1342.1.S1_at BG842254 - - 4e-5 At1g23230 unknown protein O.I. H.G. S.X.
0.40 48.5 0.98 Zm.13366.1.A1_a_at CF634270 - - 3e-1 At3g45960 ATEXLA3 (arabidopsis thaliana expansin-like a3) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.7 98.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3 98.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5 97.5 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1 90.8 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the rice gene, Os01g0777800, orthologous to the query gene, Zm.15437.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 Os01g0777800 At5g37670 - Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein 4e-2 At1g27060 regulator of chromosome condensation (RCC1) family protein O.I. H.G. S.X.
0.58 77.0 Os06g0283200 At5g37670 - Zn-finger-like, PHD finger domain containingprotein 1e+0 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative O.I. H.G. S.X.
0.55 73.7 Os09g0383400 At5g37670 - Helicase, C-terminal domain containing protein 9e-5 At1g59990 DEAD/DEAH box helicase, putative (RH22) O.I. H.G. S.X.
0.53 71.3 Os05g0194000 At5g37670 - Hypothetical protein 1e+0 At3g29300 unknown protein O.I. H.G. S.X.
0.52 69.6 Os04g0626700 At5g37670 - Conserved hypothetical protein 1e+0 At4g02260 RSH1 (RELA-SPOT HOMOLOG 1) O.I. H.G. S.X.
0.52 69.6 Os07g0122900 At5g37670 - Cyclin-like F-box domain containing protein 9e-2 At1g74080 MYB122 (MYB DOMAIN PROTEIN 122) O.I. H.G. S.X.
0.46 60.9 Os03g0326600 At5g37670 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 3e-25 At1g09230 RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.45 58.8 Os05g0240200 At5g37670 - Disease resistance protein family protein 7e-7 At3g15880 protein binding O.I. H.G. S.X.
0.38 46.9 Os06g0130000 At5g37670 - Tobacco mosaic virus helicase domain-bindingprotein (Fragment) 3e-27 At2g45500 ATP binding / nucleoside-triphosphatase/ nucleotide binding O.I. H.G. S.X.
0.36 44.0 Os01g0530500 At5g37670 - Conserved hypothetical protein 3e+0 At2g31440 protein binding O.I. H.G. S.X.
0.27 27.5 Os12g0294100 At5g37670 - WD40-like domain containing protein 1e-3 At2g47790 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.26 25.6 Os01g0912600 At5g37670 - Conserved hypothetical protein 1e-2 At1g28560 SRD2 (SHOOT REDIFFERENTIATION DEFECTIVE 2) O.I. H.G. S.X.
0.20 16.5 Os08g0440200 At5g37670 - Ribonuclease CAF1 family protein 3e-2 At3g25430 CAF1 family ribonuclease O.I. H.G. S.X.
0.17 12.6 Os02g0189900 At5g37670 - - 7e-5 At1g02330 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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