Co-expression analysis

Gene ID	Zm.15390.1.A1_at
Gene name	hypothetical protein LOC100280068
Homology with Arabidopsis	Similar to At5g19740: peptidase M28 family protein (HF=4e-7)
Module size	6 genes
NF	0.10
%ile	6.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.98	Zm.15390.1.A1_at	BM267333	hypothetical protein LOC100280068	-	4e-7	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.16969.1.A1_at	CF972346	developmentally-regulated GTP-binding protein 2	-	2e-56	At1g17470	ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.98	Zm.19201.2.S1_a_at	CO526388	hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.98	Zm.12878.1.S1_at	CA400963	-	-	9e-3	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.98	Zm.12093.1.A1_at	BM349818	-	-	6e+0	At3g24100	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.98	Zm.2098.1.S1_at	AY105824.1	oleosin1	-	2e+0	At2g47780	rubber elongation factor (REF) protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.22300.1.S1_at, orthologous to the query gene, Zm.15390.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	96.0	PtpAffx.22300.1.S1_at	At5g19740	hypothetical protein	-	5e-7	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.83	97.0	Ptp.559.1.S1_at	At5g19740	hypothetical protein	-	4e+0	At2g35090	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	Ptp.6070.1.S1_at	At5g19740	hypothetical protein	-	1e+0	At2g48120	PAC (PALE CRESS)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.954.1.S1_at	At5g19740	hypothetical protein	-	6e-19	At2g21230	bZIP family transcription factor	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	Ptp.4388.1.S1_at	At5g19740	hypothetical protein	-	4e-44	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	Ptp.8084.1.A1_at	At5g19740	cc-nbs-lrr resistance protein	-	4e-1	At2g41200	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	PtpAffx.1403.2.S1_at	At5g19740	hypothetical protein	-	3e-9	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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