Co-expression analysis

Gene ID	Zm.15390.1.A1_at
Gene name	hypothetical protein LOC100280068
Homology with Arabidopsis	Similar to At5g19740: peptidase M28 family protein (HF=4e-7)
Module size	6 genes
NF	0.10
%ile	6.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.98	Zm.15390.1.A1_at	BM267333	hypothetical protein LOC100280068	-	4e-7	At5g19740	peptidase M28 family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.16969.1.A1_at	CF972346	developmentally-regulated GTP-binding protein 2	-	2e-56	At1g17470	ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.98	Zm.19201.2.S1_a_at	CO526388	hypothetical protein LOC100216991	-	2e+0	At5g39650	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.98	Zm.12878.1.S1_at	CA400963	-	-	9e-3	At5g11560	catalytic	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.98	Zm.12093.1.A1_at	BM349818	-	-	6e+0	At3g24100	-	O.I.	H.G.	S.X.	Please select
0.03	1.1	0.98	Zm.2098.1.S1_at	AY105824.1	oleosin1	-	2e+0	At2g47780	rubber elongation factor (REF) protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.2	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig13378_at, orthologous to the query gene, Zm.15390.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.3	Contig13378_at	At5g19740	-	-	6e+0	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig11213_at	At5g19740	-	-	5e+0	At1g07747	-	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig17573_at	At5g19740	-	-	2e+0	At3g24270	APUM25 (Arabidopsis Pumilio 25)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig15143_at	At5g19740	-	-	4e-4	At2g28680	cupin family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig17426_at	At5g19740	-	-	5e+0	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	HVSMEk0007B15r2_x_at	At5g19740	-	-	4e-1	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig15977_at	At5g19740	-	-	2e+1	At5g38435	SPH8 (S-PROTEIN HOMOLOGUE 8)	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig2535_s_at	At5g19740	-	-	3e-1	At5g54160	ATOMT1 (O-METHYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig16506_at	At5g19740	-	-	1e-13	At3g27020	YSL6 (YELLOW STRIPE LIKE 6)	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig19617_at	At5g19740	-	-	2e+0	At5g55320	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig12896_at	At5g19740	-	-	2e-3	At5g08630	DDT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	HVSMEb0008F12r2_at	At5g19740	-	-	8e-5	At2g25970	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig16214_at	At5g19740	-	-	2e+0	At3g26790	FUS3 (FUSCA 3)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig2640_s_at	At5g19740	-	-	3e-20	At1g05010	EFE (ETHYLENE-FORMING ENZYME)	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig14638_at	At5g19740	-	-	4e-35	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.13	11.6	Contig25746_at	At5g19740	-	-	4e-1	At3g59620	-	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig14377_at	At5g19740	-	-	6e+0	At4g02040	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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