Co-expression analysis

Gene ID Zm.15314.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g06080: unknown protein (HF=1e-11)
Module size 6 genes
NF 0.40
%ile 46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5571.60.98Zm.15314.1.S1_atCF972544--1e-11At3g06080unknown proteinO.I.H.G.S.X.
0.6785.80.99Zm.4230.1.S1_atCO523811--4e-5At1g17650GLYR2 (GLYOXYLATE REDUCTASE 2)O.I.H.G.S.X.
0.5369.10.98ZmAffx.836.1.A1_atAI770581--2e-1At3g24350SYP32 (SYNTAXIN OF PLANTS 32)O.I.H.G.S.X.
0.3336.00.99ZmAffx.70.1.A1_atAI665164--8e-1At2g37780DC1 domain-containing proteinO.I.H.G.S.X.
0.3336.00.99ZmAffx.788.1.A1_atAI759113--8e-1At4g33925unknown proteinO.I.H.G.S.X.
0.2419.80.98Zm.11935.1.A1_atBM381982--6e-1At1g25420unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.10.97Zm.1746.1.A1_a_atBG840562hypothetical protein LOC100278852-8e-8At2g30942unknown proteinO.I.H.G.S.X.
0.5065.70.97ZmAffx.944.1.A1_atAI820414--2e-10At3g57150NAP57 (Arabidopsis thaliana homologue of NAP57)O.I.H.G.S.X.
0.4048.50.98Zm.10375.1.S1_atBQ703821--2e-17At2g35360ubiquitin family proteinO.I.H.G.S.X.
0.4048.50.98ZmAffx.918.1.S1_atAI782957hypothetical protein LOC100276424-8e-1At3g06750hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3844.20.97Zm.2825.4.A1_atCF011665hypothetical protein LOC100192808-6e-41At1g22450COX6B (CYTOCHROME C OXIDASE 6B)O.I.H.G.S.X.
0.3844.20.98Zm.10221.1.A1_atCF635822UPF0497 membrane protein 8-2e+0At4g16750DRE-binding transcription factor, putativeO.I.H.G.S.X.
0.3641.30.98ZmAffx.805.1.A1_atAI770378--2e-1At4g14800PBD2 (20S PROTEASOME BETA SUBUNIT 2)O.I.H.G.S.X.
0.3641.30.98Zm.14591.1.S1_atCF006266triosephosphate isomerase, cytosolic-3e-9At3g55440TPI (TRIOSEPHOSPHATE ISOMERASE)O.I.H.G.S.X.
0.3641.30.99Zm.301.2.A1_atCO521836hypothetical protein LOC100276367-4e-9At2g34510-O.I.H.G.S.X.
0.3538.90.98Zm.12666.2.S1_atAY536126.1meg6 protein-4e-2At1g60650glycine-rich RNA-binding protein, putativeO.I.H.G.S.X.
0.3336.00.98Zm.15628.1.S1_atCF628706hypothetical protein LOC100193098-2e-10At3g54320WRI1 (WRINKLED 1)O.I.H.G.S.X.
0.3336.00.99Zm.2269.1.S1_atCF631922--1e-7At5g51820PGM (PHOSPHOGLUCOMUTASE)O.I.H.G.S.X.
0.3233.40.98Zm.6779.2.S1_a_atAY107207.1--3e+0At4g21460unknown proteinO.I.H.G.S.X.
0.3131.60.98Zm.13982.1.S1_atAY104726.1hypothetical protein LOC100272291-2e-17At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.3131.60.98Zm.2817.2.A1_atCB350638hypothetical protein LOC100277525-7e+0At5g66040STR16 (SULFURTRANSFERASE PROTEIN 16)O.I.H.G.S.X.
0.3029.80.97Zm.13315.1.S1_atCA827618pairing protein meu13-like-9e-15At1g13330-O.I.H.G.S.X.
0.2928.10.98Zm.11024.1.S1_atAY105541.1hypothetical protein LOC100193220-2e-17At5g62530ALDH12A1O.I.H.G.S.X.
0.2928.10.98Zm.4183.1.A1_atAI857198--4e-1At4g03113unknown proteinO.I.H.G.S.X.
0.2928.10.99Zm.11586.1.A1_atBM379136--6e+0Atmg00280-O.I.H.G.S.X.
0.2828.10.96Zm.9554.1.A1_atBM267111hypothetical protein LOC100280419-5e+0At3g53850-O.I.H.G.S.X.
0.2724.60.97Zm.16958.2.A1_x_atAW331652hypothetical protein LOC100193269-8e-5At5g1613040S ribosomal protein S7 (RPS7C)O.I.H.G.S.X.
0.2724.60.98Zm.11958.1.A1_atAY560384.1elongated mesocotyl1-2e+0At3g04670WRKY39O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.298.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.398.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM253265ZM_4d_SG200_3inf_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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