Co-expression analysis

Gene ID	Zm.15314.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g06080: unknown protein (HF=1e-11)
Module size	6 genes
NF	0.40
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.98	Zm.15314.1.S1_at	CF972544	-	-	1e-11	At3g06080	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.4230.1.S1_at	CO523811	-	-	4e-5	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	ZmAffx.836.1.A1_at	AI770581	-	-	2e-1	At3g24350	SYP32 (SYNTAXIN OF PLANTS 32)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.98	Zm.11935.1.A1_at	BM381982	-	-	6e-1	At1g25420	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.4	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the grape gene, 1611799_at, orthologous to the query gene, Zm.15314.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	81.9	1611799_at	At3g06080	hypothetical protein LOC100255639	-	4e-4	At5g06700	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	1613480_at	At3g06080	hypothetical protein LOC100247977	-	3e+0	At2g02835	-	O.I.	H.G.	S.X.	Please select
0.27	34.0	1616394_at	At3g06080	hypothetical protein LOC100267852	-	1e+0	At3g51830	ATG5	O.I.	H.G.	S.X.	Please select
0.27	34.0	1619005_at	At3g06080	-	-	3e-14	At5g46410	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1616171_at	At3g06080	hypothetical protein LOC100251471	-	3e-18	At5g48380	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.15	15.6	1610599_at	At3g06080	hypothetical protein LOC100250338	-	7e+0	At5g16790	-	O.I.	H.G.	S.X.	Please select
0.14	14.4	1622116_at	At3g06080	hypothetical protein LOC100264025	-	4e-2	At4g01895	systemic acquired resistance (SAR) regulator protein NIMIN-1-related	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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