Co-expression analysis

Gene ID	Zm.15314.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g06080: unknown protein (HF=1e-11)
Module size	6 genes
NF	0.40
%ile	46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	71.6	0.98	Zm.15314.1.S1_at	CF972544	-	-	1e-11	At3g06080	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.4230.1.S1_at	CO523811	-	-	4e-5	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.98	ZmAffx.836.1.A1_at	AI770581	-	-	2e-1	At3g24350	SYP32 (SYNTAXIN OF PLANTS 32)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.98	Zm.11935.1.A1_at	BM381982	-	-	6e-1	At1g25420	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.4	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.121172.1.S1_at, orthologous to the query gene, Zm.15314.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	94.8	TaAffx.121172.1.S1_at	At3g06080	-	-	5e-1	At1g72600	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.7295.3.S1_x_at	At3g06080	-	-	4e-3	At2g23420	NAPRT2 (NICOTINATE PHOSPHORIBOSYLTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	Ta.23108.3.S1_x_at	At3g06080	-	-	4e+0	At5g26870	AGL26	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.135182.1.S1_at	At3g06080	-	-	2e+1	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.29496.2.S1_at	At3g06080	-	-	2e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	O.I.	H.G.	S.X.	Please select
0.36	51.9	Ta.22988.1.S1_at	At3g06080	-	-	3e+0	At1g70830	MLP28 (MLP-LIKE PROTEIN 28)	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.7371.1.S1_at	At3g06080	-	-	4e-6	At2g28305	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.58105.1.S1_at	At3g06080	-	-	1e+1	At5g57510	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.85685.1.S1_at	At3g06080	-	-	3e+0	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.32	44.4	Ta.3909.1.A1_at	At3g06080	-	-	8e-1	At3g01400	armadillo/beta-catenin repeat family protein	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.7765.1.S1_at	At3g06080	-	-	2e-1	At4g33870	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.54368.2.A1_at	At3g06080	-	-	1e+1	At5g14920	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.113092.1.S1_at	At3g06080	-	-	1e+0	At5g02550	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.120617.1.S1_at	At3g06080	-	-	4e+0	At2g39470	PPL2 (PsbP-like protein 2)	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.135182.1.S1_x_at	At3g06080	-	-	2e+1	At5g23640	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.10343.3.S1_at	At3g06080	-	-	4e+0	At2g39010	PIP2E (PLASMA MEMBRANE INTRINSIC PROTEIN 2E)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.51397.1.S1_at	At3g06080	-	-	4e-49	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.29371.1.S1_at	At3g06080	-	-	4e+0	At5g18310	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.7193.3.S1_at	At3g06080	-	-	1e+1	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.82721.1.S1_at	At3g06080	-	-	3e+1	At4g20780	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.24	30.3	TaAffx.110167.1.S1_at	At3g06080	-	-	4e+0	At4g14440	HCD1 (3-HYDROXYACYL-COA DEHYDRATASE 1)	O.I.	H.G.	S.X.	Please select
0.24	30.3	Ta.6594.2.S1_at	At3g06080	-	-	4e+0	At1g25300	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.110652.1.S1_at	At3g06080	-	-	1e-2	At2g23690	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.110096.1.S1_at	At3g06080	-	-	6e-3	At2g45530	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	TaAffx.120295.1.S1_at	At3g06080	-	-	2e+1	At5g42504	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	29.0	Ta.26673.1.A1_at	At3g06080	-	-	1e-9	At2g32950	COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.4857.1.S1_at	At3g06080	-	-	4e+0	At1g77682	-	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.112465.1.S1_s_at	At3g06080	-	-	3e-13	At4g00360	CYP86A2 (CYTOCHROME P450 86 A2)	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.4659.2.S1_at	At3g06080	-	-	4e+0	At5g21060	homoserine dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.114049.1.S1_at	At3g06080	-	-	5e+0	At4g33560	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	TaAffx.54172.1.S1_at	At3g06080	-	-	2e+1	At3g47980	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.105503.1.S1_at	At3g06080	-	-	1e+0	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.14061.1.S1_at	At3g06080	-	-	1e+0	At4g22666	-	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.85941.1.S1_at	At3g06080	-	-	2e+1	At5g23760	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.12493.1.S1_at	At3g06080	-	-	5e-1	At5g48175	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	18.2	TaAffx.30652.1.S1_at	At3g06080	-	-	3e-4	At2g30260	U2B'' (U2 small nuclear ribonucleoprotein B)	O.I.	H.G.	S.X.	Please select
0.13	14.6	TaAffx.59306.1.S1_at	At3g06080	-	-	1e+0	At4g22570	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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