CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.15314.1.S1_at

Gene name
Homology with Arabidopsis Similar to At3g06080: unknown protein (HF=1e-11)

Module size 6 genes

NF 0.40

%ile 46.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 71.6 0.98 Zm.15314.1.S1_at CF972544 - - 1e-11 At3g06080 unknown protein O.I. H.G. S.X.
0.67 85.8 0.99 Zm.4230.1.S1_at CO523811 - - 4e-5 At1g17650 GLYR2 (GLYOXYLATE REDUCTASE 2) O.I. H.G. S.X.
0.53 69.1 0.98 ZmAffx.836.1.A1_at AI770581 - - 2e-1 At3g24350 SYP32 (SYNTAXIN OF PLANTS 32) O.I. H.G. S.X.
0.33 36.0 0.99 ZmAffx.70.1.A1_at AI665164 - - 8e-1 At2g37780 DC1 domain-containing protein O.I. H.G. S.X.
0.33 36.0 0.99 ZmAffx.788.1.A1_at AI759113 - - 8e-1 At4g33925 unknown protein O.I. H.G. S.X.
0.24 19.8 0.98 Zm.11935.1.A1_at BM381982 - - 6e-1 At1g25420 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.4 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2 98.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9 98.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3 98.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8 98.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM253265 ZM_4d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the rice gene, Os11g0148200, orthologous to the query gene, Zm.15314.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 Os11g0148200 At3g06080 - Protein of unknown function DUF231 domaincontaining protein 3e-6 At5g19160 unknown protein O.I. H.G. S.X.
0.67 87.2 Os06g0724200 At3g06080 - Hypothetical protein 3e+0 Atmg00010 - O.I. H.G. S.X.
0.67 87.2 Os02g0106700 At3g06080 - Conserved hypothetical protein 4e-1 At5g24680 - O.I. H.G. S.X.
0.47 62.3 Os03g0725300 At3g06080 - Metallophosphoesterase domain containing protein 2e-7 At4g31770 calcineurin-like phosphoesterase family protein O.I. H.G. S.X.
0.36 44.0 Os02g0592600 At3g06080 - Copper amine oxidase family protein 6e-1 At4g33020 ZIP9 O.I. H.G. S.X.
0.17 12.6 Os10g0104700 At3g06080 - Octicosapeptide/Phox/Bem1p domain containingprotein 3e-2 At2g46640 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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