Co-expression analysis

Gene ID	Zm.15307.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g24400: LHT2 (LYSINE HISTIDINE TRANSPORTER 2) (HF=2e-11)
Module size	11 genes
NF	0.33
%ile	33.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	86.5	0.76	Zm.15307.1.A1_at	CF014037	-	-	2e-11	At1g24400	LHT2 (LYSINE HISTIDINE TRANSPORTER 2)	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.95	Zm.1010.1.A1_at	U85495.1	LON2 protein	-	4e-20	At5g26860	LON1 (LON PROTEASE 1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.95	ZmAffx.1147.1.A1_at	AW400224	-	-	6e-1	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	ZmAffx.767.1.A1_at	AI746090	hypothetical protein LOC100273842	-	3e+0	At4g18090	unknown protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	ZmAffx.783.1.A1_s_at	AI745854	nucleolin	-	8e-7	At1g51730	RWD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	ZmAffx.524.1.A1_at	AI711679	-	-	1e+1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.95	ZmAffx.1184.1.A1_at	AW927978	-	-	1e-2	At2g38640	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	ZmAffx.809.1.A1_at	AI770393	-	-	4e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.93	ZmAffx.800.1.A1_at	AI770361	-	-	2e-4	At3g58580	hydrolase	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.98	ZmAffx.285.1.S1_at	AI670418	-	-	1e+1	At5g57270	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.5560.1.S1_at	AY106940.1	hypothetical protein LOC100279306	-	4e+0	At5g03120	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.6	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
7.4	97.8	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.9	97.7	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.2	97.4	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.1	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage