Co-expression analysis

Gene ID Zm.15222.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g38750: ANNAT4 (ANNEXIN ARABIDOPSIS 4) (HF=4e+0)
Module size 22 genes
NF 0.35
%ile 35.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8495.80.99Zm.15222.1.A1_atBM347513--4e+0At2g38750ANNAT4 (ANNEXIN ARABIDOPSIS 4)O.I.H.G.S.X.
0.6077.80.99ZmAffx.917.1.S1_atAI782944--1e+1At5g26810pectinesterase family proteinO.I.H.G.S.X.
0.5571.60.99ZmAffx.1104.1.A1_atAW191449hypothetical protein LOC100280210-2e-1At2g01960TET14 (TETRASPANIN14)O.I.H.G.S.X.
0.5065.70.99Zm.3804.1.S1_atAW061673chalcone synthase G-3e-3At4g34850chalcone and stilbene synthase family proteinO.I.H.G.S.X.
0.4961.90.99Zm.10674.1.A1_atBM380580hypothetical protein LOC100194243-1e+0At4g25720QC (GLUTAMINYL CYCLASE)O.I.H.G.S.X.
0.4658.40.99Zm.1690.1.A1_atCK347441density-regulated protein-4e-17At5g11900eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.4658.40.99ZmAffx.908.1.S1_atAI770943hypothetical protein LOC100279225-8e-1At5g41720-O.I.H.G.S.X.
0.4455.70.99Zm.18515.1.A1_atCF629792hypothetical protein LOC100191462-1e+0At1g16430surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.4251.30.99Zm.10513.2.S1_a_atAY106791.1hypothetical protein LOC100277818-3e-3At1g68390unknown proteinO.I.H.G.S.X.
0.3538.90.99ZmAffx.751.1.A1_atAI745874--1e+1At5g44990-O.I.H.G.S.X.
0.3336.00.99ZmAffx.732.1.S1_atAI740043--5e+0At3g16640TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)O.I.H.G.S.X.
0.3233.40.99Zm.13354.1.S1_s_atAW067009indole-3-acetic acid-amido synthetase GH3.8-4e-12At2g14960GH3.1O.I.H.G.S.X.
0.3029.80.99Zm.1094.1.A1_atBM339500--2e-5At5g26210AL4 (ALFIN-LIKE 4)O.I.H.G.S.X.
0.3029.80.99Zm.17344.1.S1_atCK370586--4e+0At4g34050caffeoyl-CoA 3-O-methyltransferase, putativeO.I.H.G.S.X.
0.2928.10.99ZmAffx.608.1.A1_atAI715036--2e+0At2g15890MEE14 (maternal effect embryo arrest 14)O.I.H.G.S.X.
0.2928.10.99Zm.7830.1.S1_atBM080060nucleic acid binding protein-4e-1At2g03190ASK16 (ARABIDOPSIS SKP1-LIKE 16)O.I.H.G.S.X.
0.2622.70.99Zm.17818.1.A1_atCK145213--6e+0At5g52470FIB1 (FIBRILLARIN 1)O.I.H.G.S.X.
0.2318.60.99Zm.10563.1.S1_atCF007885hypothetical protein LOC100193826-3e-6At3g10850GLY2O.I.H.G.S.X.
0.2318.60.99Zm.6069.1.A1_a_atAY104047.1--1e-17At2g4184040S ribosomal protein S2 (RPS2C)O.I.H.G.S.X.
0.2318.60.99ZmAffx.898.1.A1_atAI770889--8e-1At3g15280unknown proteinO.I.H.G.S.X.
0.1912.80.99ZmAffx.758.1.S1_atAI746000--3e-3At4g22260IM (IMMUTANS)O.I.H.G.S.X.
0.1912.80.99Zm.12481.1.A1_atAI920547--4e+0At3g30845unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
23.799.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.399.1GSM320467protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.398.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320471protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320473protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320468protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320466protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.598.3GSM320463protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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