Co-expression analysis

Gene ID	Zm.15215.1.A1_at
Gene name	Hypothetical protein LOC100193843
Homology with Arabidopsis	Similar to At5g22870: harpin-induced protein-related / HIN1-related / harpin-responsive protein-related (HF=1e+0)
Module size	6 genes
NF	0.38
%ile	41.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.97	Zm.15215.1.A1_at	BM332652	Hypothetical protein LOC100193843	-	1e+0	At5g22870	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.5012.1.A1_at	CK849978	auxin response factor 75	-	9e-1	At3g45050	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.18946.1.A1_at	BM338625	hypothetical protein LOC100278262	-	1e+0	At1g69660	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.9542.1.A1_at	CF624708	hypothetical protein LOC100192045	-	3e-16	At4g16170	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.97	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
21.5	99.4	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
15.2	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.8	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, HV_CEb0016P15r2_at, orthologous to the query gene, Zm.15215.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	88.7	HV_CEb0016P15r2_at	At5g22870	-	-	8e-2	At2g46100	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig18568_at	At5g22870	-	-	5e-1	At4g27710	CYP709B3	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig17426_at	At5g22870	-	-	5e+0	At5g46780	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig15143_at	At5g22870	-	-	4e-4	At2g28680	cupin family protein	O.I.	H.G.	S.X.	Please select
0.12	10.4	HVSMEk0017G20r2_at	At5g22870	-	-	3e+0	At2g27670	unknown protein	O.I.	H.G.	S.X.	Please select
0.08	6.5	Contig17573_at	At5g22870	-	-	2e+0	At3g24270	APUM25 (Arabidopsis Pumilio 25)	O.I.	H.G.	S.X.	Please select
0.04	3.4	HK03B01r_at	At5g22870	-	-	1e+0	At2g25250	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage