Co-expression analysis

Gene ID Zm.15206.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g57230: AGL16 (AGAMOUS-LIKE 16) (HF=6e-18)
Module size 7 genes
NF 0.21
%ile 16.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5369.10.90Zm.15206.1.A1_atBM268642--6e-18At3g57230AGL16 (AGAMOUS-LIKE 16)O.I.H.G.S.X.
0.2828.10.91Zm.12338.1.S1_atBQ744947hypothetical protein LOC100276807-5e+0At5g40451unknown proteinO.I.H.G.S.X.
0.2014.20.91Zm.2279.1.S1_atBF728020--2e-2At3g54010PAS1 (PASTICCINO 1)O.I.H.G.S.X.
0.2014.20.93Zm.5017.1.S1_atBM072931dynamin-related protein 1C-5e-46At1g14830ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)O.I.H.G.S.X.
0.1710.60.90Zm.10103.1.A1_atAI947611hypothetical protein LOC100275728-4e+0At4g02370unknown proteinO.I.H.G.S.X.
0.147.70.92Zm.12612.1.A1_atBU050513--6e-1At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)O.I.H.G.S.X.
0.115.30.91Zm.4328.1.A1_atAI711672hypothetical protein LOC100277618-1e+0At1g43580unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.999.3GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.399.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.298.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.793.2GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig16350_at, orthologous to the query gene, Zm.15206.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9398.7Contig16350_atAt3g57230--9e-3At3g57390AGL18O.I.H.G.S.X.
0.5774.9Contig16351_atAt3g57230--5e-1At4g13480AtMYB79 (myb domain protein 79)O.I.H.G.S.X.
0.097.4Contig8100_atAt3g57230--1e-24At5g22000RHF2A (RING-H2 GROUP F2A)O.I.H.G.S.X.
0.086.5Contig2937_s_atAt3g57230--9e-27At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)O.I.H.G.S.X.
0.086.5Contig1730_s_atAt3g57230--4e-19At3g01150PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)O.I.H.G.S.X.
0.075.8Contig5296_atAt3g57230--4e-25At1g64550ATGCN3O.I.H.G.S.X.
0.054.1Contig15411_atAt3g57230--2e-4At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.032.6Contig5115_atAt3g57230--3e-6At2g32600hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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