Co-expression analysis

Gene ID	Zm.15186.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g11820: SYP121 (SYNTAXIN OF PLANTS 121) (HF=4e-1)
Module size	9 genes
NF	0.61
%ile	82.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.92	Zm.15186.1.A1_at	BM266745	-	-	4e-1	At3g11820	SYP121 (SYNTAXIN OF PLANTS 121)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	Zm.11844.1.A1_at	BM381190	-	-	1e+1	At3g29170	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.6879.1.A1_at	AI065542	-	-	4e+0	At3g24510	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.8277.1.S1_at	BM073493	Granule bound starch synthase IIa precursor	-	2e-20	At1g32900	starch synthase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.18756.1.A1_at	CO524208	hypothetical protein LOC100280138	-	1e+0	At3g54890	LHCA1	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.95	Zm.2938.1.A1_at	CF055943	hypothetical protein LOC100273709	-	2e+0	At4g38410	dehydrin, putative	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.93	Zm.5909.1.A1_at	AI665315	Hypothetical protein LOC100192467	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.15815.1.A1_at	M27821.1	NADH:nitrate reductase	-	1e-21	At1g37130	NIA2 (NITRATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.4403.1.S1_at	AY111276.1	hypothetical protein LOC100279045	-	5e+0	At5g16400	ATF2	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.6	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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