Co-expression analysis

Gene ID Zm.14983.2.S1_at
Gene name
Homology with ArabidopsisSimilar to At3g05030: NHX2 (SODIUM HYDROGEN EXCHANGER 2) (HF=5e-10)
Module size 23 genes
NF 0.73
%ile 94.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.69Zm.14983.2.S1_atCO524096--5e-10At3g05030NHX2 (SODIUM HYDROGEN EXCHANGER 2)O.I.H.G.S.X.
0.8896.70.87Zm.204.1.A1_atU22432.1ras related protein1-2e-90At4g17170RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)O.I.H.G.S.X.
0.8896.70.87Zm.3740.1.A1_atBG84085722.0 kDa class IV heat shock protein-1e-1At4g24240WRKY7O.I.H.G.S.X.
0.8595.90.88Zm.12663.1.S1_atBQ703906hypothetical protein LOC100279518-3e-2At5g46720-O.I.H.G.S.X.
0.8495.80.87Zm.10199.1.A1_atBM339092hypothetical protein LOC100193850-2e-5At1g06890transporter-relatedO.I.H.G.S.X.
0.8194.30.88Zm.4338.3.A1_atAW000126--3e+0At5g27170unknown proteinO.I.H.G.S.X.
0.8194.30.84Zm.1123.1.S1_atCF626368hypothetical protein LOC100273168-1e-17At1g243603-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductaseO.I.H.G.S.X.
0.7892.50.80Zm.2862.1.A1_atCF054010Calnexin-6e-73At5g61790calnexin 1 (CNX1)O.I.H.G.S.X.
0.7892.50.81ZmAffx.810.1.A1_atAI770396--2e-1At3g01880unknown proteinO.I.H.G.S.X.
0.7892.50.83Zm.14805.1.A1_atBM380633hypothetical protein LOC100280247-3e-6At1g01720ATAF1O.I.H.G.S.X.
0.7691.10.82Zm.14445.1.A1_atAY108518.1hypothetical protein LOC100280250-2e-54At2g28000CPN60A (CHAPERONIN-60ALPHA)O.I.H.G.S.X.
0.7691.10.86Zm.9909.1.A1_atBM332451--4e+0At5g15725unknown proteinO.I.H.G.S.X.
0.7691.10.88Zm.13444.1.S1_atCD441205dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit-2e-2At1g76400ribophorin I family proteinO.I.H.G.S.X.
0.7691.10.89Zm.11931.1.S1_atCD983258px19-like protein-4e-1At1g59590ZCF37O.I.H.G.S.X.
0.7590.80.91Zm.2917.1.A1_atAW091235Hypothetical protein LOC100192661-1e-22At3g51850CPK13O.I.H.G.S.X.
0.7490.30.86Zm.15515.1.S1_atCA404046--8e-1At4g00830RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.7389.90.81Zm.2560.1.A1_atAW017605--2e+0At4g27930unknown proteinO.I.H.G.S.X.
0.7188.20.89Zm.14465.1.S1_atAY108241.1hypothetical protein LOC100279274-5e-15At3g24550ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1)O.I.H.G.S.X.
0.5875.10.88Zm.17363.1.S1_atCK370960--2e-2At1g72080unknown proteinO.I.H.G.S.X.
0.5571.60.80Zm.10151.1.A1_atCK986091--4e-1At5g57330aldose 1-epimerase family proteinO.I.H.G.S.X.
0.5369.10.82Zm.1146.1.S1_atCF632184D-3-phosphoglycerate dehydrogenase-7e+0At3g19480D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putativeO.I.H.G.S.X.
0.5166.40.81Zm.14077.2.A1_atAY104520.1--5e+0At1g06770DRIP1 (DREB2A-INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.4048.50.76Zm.14984.1.S1_atAF457119.1knotted related homeobox5-9e-19At1g62360STM (SHOOT MERISTEMLESS)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.398.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.398.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.698.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.298.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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