Co-expression analysis

Gene ID	Zm.14951.1.S1_x_at
Gene name	cell wall protein (put.); putative
Homology with Arabidopsis	Similar to At2g30370: allergen-related (HF=5e-3)
Module size	32 genes
NF	0.28
%ile	24.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.94	Zm.14951.1.S1_x_at	M36914.1	cell wall protein (put.); putative	-	5e-3	At2g30370	allergen-related	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.96	Zm.5326.1.S1_at	AI621902	hypothetical protein LOC100193243	-	2e-11	At3g22190	IQD5 (IQ-domain 5)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.17581.1.S1_at	CK371654	hypothetical protein LOC100216838	-	2e+0	At1g68540	oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.2761.1.S1_at	AW330892	hypothetical protein LOC100279307	-	3e-3	At1g43690	ubiquitin interaction motif-containing protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.96	Zm.8551.1.A1_at	BM333970	-	-	2e+0	At5g57290	60S acidic ribosomal protein P3 (RPP3B)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.3289.1.A1_at	AI979535	-	-	2e+0	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.961.1.A1_at	CA400684	LAP4 protein	-	2e+0	At2g02370	-	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.15995.2.A1_at	AW289130	peptidyl-prolyl cis-trans isomerase CYP19-4	-	1e-18	At5g58710	ROC7	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.13310.1.S1_at	CA827497	-	-	2e-5	At1g65660	SMP1 (SWELLMAP 1)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	Zm.16049.2.A1_at	CF042888	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.95	Zm.15902.1.A1_at	CA403079	hypothetical protein LOC100280345	-	2e+0	At5g64650	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.18446.1.A1_at	CO518758	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.4283.2.A1_at	AI001292	-	-	4e-26	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.2270.1.S1_at	BF733079	ATP-dependent Clp protease adaptor protein ClpS containing protein	-	4e-1	At1g68660	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.4157.1.A1_at	AY106551.1	-	-	3e-1	At2g47950	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.95	Zm.9494.1.A1_a_at	CF628595	hypothetical protein LOC100193285	-	2e+0	At1g32720	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.5187.1.A1_at	AY104276.1	hypothetical protein LOC100272983	-	2e-4	At2g04400	indole-3-glycerol phosphate synthase (IGPS)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.6728.1.A1_at	CN844413	hydroxymethylglutaryl-CoA lyase	-	4e-1	At1g62490	mitochondrial transcription termination factor-related / mTERF-related	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.17197.2.S1_at	CK144438	hypothetical protein LOC100273140	-	3e-3	At3g51960	bZIP family transcription factor	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.98	Zm.5976.2.S1_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.95	Zm.2867.1.S1_at	AY107561.1	hypothetical protein LOC100280394	-	8e-2	At1g28190	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.12833.1.A1_at	CA400031	-	-	4e+0	At5g44265	lipid binding	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.96	Zm.3204.1.S1_x_at	BM953397	hypothetical protein LOC100278241	-	3e-1	At1g70250	receptor serine/threonine kinase, putative	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.6569.9.A1_at	AW091447	40S ribosomal protein S15	-	6e-37	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.97	Zm.12590.1.S1_at	CD441032	-	-	2e-53	At5g16930	AAA-type ATPase family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.8945.1.S1_at	AY103889.1	-	-	2e-85	At5g18580	FASS (FASS 1)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.3646.1.A1_at	CA400978	hypothetical protein LOC100272696	-	2e-7	At4g26780	AR192	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.18416.1.A1_at	CO524449	hypothetical protein LOC100193203	-	3e-1	At3g27900	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.96	Zm.658.2.A1_at	AY109666.1	dihydroflavanoid reductase-like1	-	2e+0	At5g26630	MADS-box protein (AGL35)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.96	Zm.223.1.A1_at	AB024292.1	histidine-containing phosphotransfer protein	-	2e+0	At4g32860	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.95	Zm.17687.1.S1_at	CK370166	-	-	2e-1	At1g30972	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.9	97.3	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
5.6	97.1	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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