Co-expression analysis

Gene ID	Zm.14944.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g27020: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.45
%ile	53.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.91	Zm.14944.1.A1_at	CB334702	-	-	1e+0	At5g27020	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.89	Zm.14940.1.S1_at	BM074436	hypothetical protein LOC100192835	-	5e-22	At2g20450	60S ribosomal protein L14 (RPL14A)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.91	Zm.18101.1.S1_at	CA827356	-	-	5e+0	At4g36020	CSDP1 (cold shock domain protein 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.90	Zm.1499.2.S1_a_at	BE051646	hypothetical protein LOC100274562 /// RING-H2 finger protein ATL1Q	-	7e+0	At5g10695	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.91	Zm.1769.1.S1_at	BF728598	hypothetical protein LOC100276417	-	4e-1	At5g63480	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.88	Zm.17778.1.S1_at	CK370487	-	-	1e-3	At1g77020	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the grape gene, 1621559_at, orthologous to the query gene, Zm.14944.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621559_at	At5g27020	hypothetical protein LOC100262734	-	3e-51	At3g28860	ABCB19	O.I.	H.G.	S.X.	Please select
0.83	94.6	1614094_at	At5g27020	hypothetical protein LOC100255834	-	6e-43	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.83	94.6	1614876_at	At5g27020	hypothetical protein LOC100244642	-	1e+0	At1g73510	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	1613074_at	At5g27020	similar to PDF	-	1e-1	At2g42840	PDF1 (PROTODERMAL FACTOR 1)	O.I.	H.G.	S.X.	Please select
0.67	87.9	1609418_s_at	At5g27020	hypothetical protein LOC100246054 /// hypothetical protein LOC100255543 /// hypothetical protein LOC100258516 /// hypothetical protein LOC100261331 /// hypothetical protein LOC100266538	-	4e+0	At5g35375	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	79.8	1607851_at	At5g27020	hypothetical protein LOC100266538	-	9e-2	At1g04660	glycine-rich protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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