Co-expression analysis

Gene ID Zm.1481.1.A1_at
Gene name hypothetical protein LOC100279302
Homology with ArabidopsisSimilar to At5g16400: ATF2 (HF=1e-1)
Module size 6 genes
NF 0.59
%ile 79.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.1481.1.A1_atBG841913hypothetical protein LOC100279302-1e-1At5g16400ATF2O.I.H.G.S.X.
0.5775.10.97Zm.4710.1.A1_atAI738125hypothetical protein LOC100280041-3e+0At4g34410RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1)O.I.H.G.S.X.
0.5775.10.97Zm.6402.1.S1_atAY103865.1DELLA protein DWARF8-3e-1At3g03450RGL2 (RGA-LIKE 2)O.I.H.G.S.X.
0.5065.70.98Zm.14354.1.S1_x_atCK37030340S ribosomal protein S29 /// 40S ribosomal protein S29-2e-11At4g3386540S ribosomal protein S29 (RPS29C)O.I.H.G.S.X.
0.4861.30.97Zm.6131.1.S1_atAY105213.1hypothetical protein LOC100191528-7e-1At1g74560NRP1 (NAP1-RELATED PROTEIN 1)O.I.H.G.S.X.
0.4251.30.97Zm.5196.1.A1_atBM334572PHD-finger family protein-1e+0At2g24430ANAC038 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 38)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.198.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.998.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.398.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM162267Mutant 1 with array type maize from AffymetrixGSE7030Phenotypic and molecular characterisation of a novel Bt2 allele in maizeLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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