Co-expression analysis

Gene ID	Zm.14790.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g42635: glycine-rich protein (HF=2e+1)
Module size	6 genes
NF	0.07
%ile	3.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.37	42.3	0.87	Zm.14790.1.A1_at	BM079805	-	-	2e+1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.86	Zm.9407.1.A1_at	BM268507	plastid-lipid-associated protein 2	-	3e-2	At4g04020	FIB (FIBRILLIN)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.86	Zm.1248.1.A1_at	CF649214	hypothetical protein LOC100274169	-	1e+0	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.87	ZmAffx.1144.1.S1_at	AW400064	Hypothetical protein LOC100193235	-	2e-4	At2g25140	CLPB4 (CASEIN LYTIC PROTEINASE B4)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.87	ZmAffx.278.1.A1_at	AI670406	-	-	8e-1	At1g73875	endonuclease/exonuclease/phosphatase family protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.86	Zm.9756.1.A1_at	BM338065	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	97.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
2.9	93.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
2.7	93.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, HVSMEg0001I20f_x_at, orthologous to the query gene, Zm.14790.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HVSMEg0001I20f_x_at	At5g42635	-	-	2e-1	At1g80780	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig17900_at	At5g42635	-	-	6e+0	At4g05170	DNA binding / transcription factor	O.I.	H.G.	S.X.	Please select
0.46	61.0	Contig10097_at	At5g42635	-	-	4e-1	At3g16450	jacalin lectin family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	rbags18m16_at	At5g42635	-	-	2e+0	At2g35790	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	HV_CEa0014H05r2_at	At5g42635	-	-	3e+0	At5g64850	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	HS05N06r_at	At5g42635	-	-	9e-1	At1g79110	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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