Co-expression analysis

Gene ID	Zm.14760.1.A1_at
Gene name	Ubiquitin-conjugating enzyme E2
Homology with Arabidopsis	Similar to At2g13980: nucleic acid binding (HF=2e+0)
Module size	6 genes
NF	0.64
%ile	85.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.97	Zm.14760.1.A1_at	AY104289.1	Ubiquitin-conjugating enzyme E2	-	2e+0	At2g13980	nucleic acid binding	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.1779.1.A1_at	CF020941	-	-	1e+1	At5g64020	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.96	Zm.15490.1.A1_at	CD448845	subtilisin-chymotrypsin inhibitor CI-1B	-	4e+0	At5g38930	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	Zm.16805.6.S1_x_at	BG320419	ADP-ribosylation factor 1	-	2e-99	At1g10630	ATARFA1F (ARABIDOPSIS THALIANA ADP-RIBOSYLATION FACTOR A1F)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.96	ZmAffx.592.1.S1_at	AI715020	-	-	1e+1	At3g12300	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.3084.1.A1_at	CA404291	hypothetical protein LOC100216830	-	9e-1	At5g56600	PRF3 (PROFILIN 3)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.5	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.204523.1.S1_at, orthologous to the query gene, Zm.14760.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	88.4	PtpAffx.204523.1.S1_at	At2g13980	hypothetical protein	-	8e-39	At2g16920	UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	Ptp.4771.1.S1_at	At2g13980	hypothetical protein	-	1e-10	At4g19670	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.215067.1.S1_at	At2g13980	hypothetical protein	-	3e-5	At2g21120	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.50	78.6	PtpAffx.210955.1.S1_at	At2g13980	-	-	7e-20	At3g05040	HST (HASTY)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.46	73.7	PtpAffx.212941.1.S1_s_at	At2g13980	hypothetical protein	-	5e+0	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.141519.1.S1_at	At2g13980	hypothetical protein	-	2e-120	At5g64070	PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.158805.1.S1_at	At2g13980	hypothetical protein	-	5e-25	At4g25970	PSD3 (phosphatidylserine decarboxylase 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.84497.1.S1_s_at	At2g13980	hypothetical protein	-	9e-17	At3g18140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.21	36.5	PtpAffx.159110.1.S1_at	At2g13980	hypothetical protein	-	2e-30	At1g04140	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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