Co-expression analysis

Gene ID	Zm.14706.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g27230: HTA2 (histone H2A) (HF=2e-3)
Module size	19 genes
NF	0.73
%ile	94.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	0.98	Zm.14706.1.S1_at	AY103710.1	-	-	2e-3	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.99	Zm.10811.2.S1_at	BM079148	-	-	8e+0	At4g14730	transmembrane protein-related	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.99	Zm.3942.1.A1_at	CD998416	hypothetical protein LOC100192575	-	2e-7	At1g35190	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.99	Zm.8973.1.S1_a_at	CF058354	hypothetical protein LOC100191732	-	2e-2	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.99	Zm.1438.1.S1_at	BM073074	hypothetical protein LOC100191302	-	2e-13	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.99	Zm.3845.2.A1_at	CA403952	hypothetical protein LOC100272900	-	2e-50	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.99	Zm.14513.4.S1_at	CK827180	hypothetical protein LOC100192746	-	7e-31	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.99	Zm.9641.1.A1_at	BM349151	-	-	1e-3	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.17408.1.A1_at	BE129731	hypothetical protein LOC100273071	-	4e-1	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	Zm.10807.2.S1_a_at	CD970321	hypothetical protein LOC100280257	-	4e-22	At3g16060	kinesin motor family protein	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.98	Zm.10812.1.A1_at	CD976050	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.98	Zm.10811.1.A1_s_at	CK370484	hypothetical protein LOC100192755 /// hypothetical protein LOC100277885 /// glycine-rich protein	-	1e-7	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.68	86.1	0.98	Zm.7136.1.S1_at	CO526700	NADPH-protochlorophyllide oxidoreductase	-	6e-11	At4g27440	PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.658.1.S1_a_at	AF366295.1	dihydroflavanoid reductase-like1	-	2e+0	At5g26630	MADS-box protein (AGL35)	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.1100.1.S1_at	AY107948.1	-	-	4e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.98	Zm.681.1.A1_at	AY029313.1	barley mlo defense gene homolog2	-	4e-6	At2g17480	MLO8 (MILDEW RESISTANCE LOCUS O 8)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	Zm.3944.1.S1_at	M29411.1	opaque endosperm2	-	9e-1	At4g02640	BZO2H1	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	Zm.16913.1.S1_at	BQ619268	GT1 protein	-	2e-24	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.5576.1.A1_at	AI622800	hypothetical protein LOC100279702	-	2e-1	At3g30200	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.9	97.7	GSM205420	Mo17 19 DAP endosperm tissue biological replicate 1	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
6.8	97.6	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
6.0	97.3	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.8	97.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.7	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
5.3	96.9	GSM205431	Mo17 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
4.9	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.6	96.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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