Co-expression analysis

Gene ID	Zm.14703.2.A1_a_at
Gene name	hypothetical protein LOC100194060
Homology with Arabidopsis	Similar to At5g66650: unknown protein (HF=3e-7)
Module size	36 genes
NF	0.69
%ile	90.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.92	99.2	0.98	Zm.14703.2.A1_a_at	CF634914	hypothetical protein LOC100194060	-	3e-7	At5g66650	unknown protein	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.99	Zm.353.1.S1_at	CF636600	profilin	-	2e-12	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.99	ZmAffx.289.1.A1_at	AI670251	-	-	2e+1	At5g15430	calmodulin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.87	96.4	0.99	Zm.16527.1.A1_s_at	CF637778	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.98	Zm.7012.12.S1_a_at	AI691869	Ribosomal protein S8	-	4e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.99	Zm.3929.1.S1_at	CO534253	hypothetical protein LOC100274493	-	7e-1	At1g78680	ATGGH2 (gamma-glutamyl hydrolase 2)	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.99	Zm.2978.1.S1_at	CD981283	peptidyl-tRNA hydrolase	-	4e-10	At1g18440	peptidyl-tRNA hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.82	94.6	0.99	Zm.14702.1.A1_at	CF628124	Ribosomal protein S11	-	1e+0	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.98	Zm.3939.1.A1_at	AY111051.1	hypothetical protein LOC100273567	-	1e+0	At3g44280	unknown protein	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.99	Zm.3937.2.A1_at	AY112354.1	-	-	4e+0	At5g07020	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.99	Zm.3940.1.S1_at	AY280630.1	single myb histone 5	-	3e-3	At1g49950	DNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.75	90.8	0.99	Zm.7128.1.A1_a_at	BM333224	hypothetical protein LOC100276381	-	2e+0	At5g25290	F-box family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.6248.1.A1_at	CB833922	-	-	3e+0	At5g07890	myosin heavy chain-related	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.16530.1.A1_at	BM953023	-	-	3e-51	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.99	Zm.3934.1.S1_at	AI947382	hypothetical protein LOC100277172	-	8e+0	At4g28460	unknown protein	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.99	Zm.7034.2.S1_at	AI770602	-	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.0	0.99	Zm.14490.1.S1_at	AY104507.1	-	-	3e-4	At2g25070	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.99	Zm.2142.1.A1_at	CK369102	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.14413.1.A1_at	CF052725	hypothetical protein LOC100279243	-	1e-21	At5g10270	CDKC	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.16527.1.A1_at	CF637778	hypothetical protein LOC100277800	-	5e-13	At1g03260	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.16805.3.S1_x_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.2200.1.A1_at	BG841101	-	-	6e+0	At4g35785	nucleic acid binding / nucleotide binding	O.I.	H.G.	S.X.	Please select
0.66	82.3	0.99	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.99	Zm.7048.1.A1_at	AI677399	hypothetical protein LOC100194145	-	6e-7	At4g30996	unknown protein	O.I.	H.G.	S.X.	Please select
0.65	82.1	0.99	Zm.14501.4.S1_a_at	CK849957	hypothetical protein LOC100191411 /// hypothetical protein LOC100280317	-	3e-46	At5g22060	ATJ2	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.7126.2.S1_at	AY110592.1	-	-	2e-9	At3g51460	RHD4 (ROOT HAIR DEFECTIVE4)	O.I.	H.G.	S.X.	Please select
0.62	79.8	0.99	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	Zm.3937.1.S1_a_at	BQ294219	hypothetical protein LOC100276728	-	6e-4	At4g25680	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.99	Zm.14705.1.S1_at	CA405205	leucoanthocyanidin dioxygenase	-	2e+0	At1g35320	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.99	Zm.714.1.A1_at	U66105.1	phospholipid transfer protein	-	6e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.14474.1.A1_at	AY104519.1	-	-	1e-33	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.1323.1.S1_at	AY107806.1	hypothetical protein LOC100275312	-	6e+0	At3g30840	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.99	Zm.7034.2.A1_a_at	AI770602	hypothetical protein LOC100279884	-	1e+0	At4g18080	unknown protein	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.98	Zm.16532.4.S1_x_at	BI423682	60S ribosomal protein L18a	-	7e-68	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.99	Zm.5823.1.A1_at	CO520297	hypothetical protein LOC100194104	-	2e-10	At1g14310	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.0	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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