Co-expression analysis

Gene ID	Zm.14692.1.A1_s_at
Gene name	hypothetical protein LOC100276042
Homology with Arabidopsis	Similar to At1g09195: - (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	1.00	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	1.00	Zm.3169.5.S1_x_at	AI739763	minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	Zm.7727.1.S1_s_at	CK986121	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	5e-129	At5g20620	UBQ4	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.7016.1.A1_a_at	AY103859.1	hypothetical protein LOC100275203 /// hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.34.2.S1_at	AY103769.1	-	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1622658_at, orthologous to the query gene, Zm.14692.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1622658_at	At1g09195	-	-	5e+0	At4g03565	-	O.I.	H.G.	S.X.	Please select
0.22	25.6	1611024_at	At1g09195	-	-	6e+0	At5g03310	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	1615699_s_at	At1g09195	hypothetical protein LOC100262542	-	1e-108	At3g58610	ketol-acid reductoisomerase	O.I.	H.G.	S.X.	Please select
0.08	8.5	1622177_s_at	At1g09195	hypothetical protein LOC100260347	-	2e+0	At2g40745	unknown protein	O.I.	H.G.	S.X.	Please select
0.05	6.0	1622564_at	At1g09195	hypothetical protein LOC100260573	-	1e-35	At1g58684	40S ribosomal protein S2, putative	O.I.	H.G.	S.X.	Please select
0.02	3.2	1620172_at	At1g09195	hypothetical protein LOC100241577	-	2e+0	At5g37760	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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