Co-expression analysis

Gene ID	Zm.14692.1.A1_s_at
Gene name	hypothetical protein LOC100276042
Homology with Arabidopsis	Similar to At1g09195: - (HF=5e+0)
Module size	6 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	1.00	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	O.I.	H.G.	S.X.	Please select
0.67	85.8	1.00	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	1.00	Zm.3169.5.S1_x_at	AI739763	minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	1.00	Zm.7727.1.S1_s_at	CK986121	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	5e-129	At5g20620	UBQ4	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.7016.1.A1_a_at	AY103859.1	hypothetical protein LOC100275203 /// hypothetical protein LOC100276238	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	O.I.	H.G.	S.X.	Please select
0.50	65.7	1.00	Zm.34.2.S1_at	AY103769.1	-	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.4	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.81784.1.S1_at, orthologous to the query gene, Zm.14692.1.A1_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.3	TaAffx.81784.1.S1_at	At1g09195	-	-	2e+0	At2g42990	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.20832.1.S1_at	At1g09195	-	-	1e+1	At5g18407	-	O.I.	H.G.	S.X.	Please select
0.51	73.0	TaAffx.70716.1.S1_at	At1g09195	-	-	1e+0	At5g41440	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.51	73.0	TaAffx.84292.1.S1_at	At1g09195	-	-	2e+0	At4g05070	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.51251.1.S1_at	At1g09195	-	-	2e+0	At4g21500	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.62780.1.S1_at	At1g09195	-	-	4e+0	At1g22050	MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.24302.1.S1_at	At1g09195	-	-	2e-69	At1g04480	60S ribosomal protein L23 (RPL23A)	O.I.	H.G.	S.X.	Please select
0.44	64.5	TaAffx.24773.1.S1_at	At1g09195	-	-	1e+1	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	O.I.	H.G.	S.X.	Please select
0.44	64.5	Ta.1965.1.S1_at	At1g09195	-	-	6e-3	At4g23330	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.4063.3.S1_s_at	At1g09195	-	-	8e-1	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.58533.1.S1_at	At1g09195	-	-	1e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	O.I.	H.G.	S.X.	Please select
0.37	53.0	TaAffx.79010.1.S1_at	At1g09195	-	-	3e+0	At4g31470	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.31791.1.S1_at	At1g09195	-	-	7e-1	At5g26717	-	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.81777.1.S1_at	At1g09195	-	-	4e+0	At4g37450	AGP18 (ARABINOGALACTAN PROTEIN 18)	O.I.	H.G.	S.X.	Please select
0.34	48.1	TaAffx.8469.1.S1_at	At1g09195	-	-	1e+1	At4g13140	-	O.I.	H.G.	S.X.	Please select
0.33	46.9	TaAffx.128418.72.S1_at	At1g09195	-	-	2e+1	At5g28620	protein kinase C-related	O.I.	H.G.	S.X.	Please select
0.32	44.4	TaAffx.79549.1.S1_s_at	At1g09195	Protein serine/threonine kinase-like	-	1e+1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.31	42.7	Ta.24041.1.A1_x_at	At1g09195	-	-	1e+0	At4g36240	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.20860.1.S1_a_at	At1g09195	-	-	1e+0	At4g35783	RTFL6 (ROTUNDIFOLIA LIKE 6)	O.I.	H.G.	S.X.	Please select
0.29	39.2	TaAffx.106849.3.S1_at	At1g09195	-	-	1e-1	At4g39410	WRKY13	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.5480.3.S1_at	At1g09195	Urate oxidase	-	1e+0	At4g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	TaAffx.30673.1.S1_at	At1g09195	-	-	7e-11	At4g25630	FIB2 (FIBRILLARIN 2)	O.I.	H.G.	S.X.	Please select
0.20	24.0	TaAffx.78264.1.S1_at	At1g09195	-	-	8e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.39488.1.A1_at	At1g09195	-	-	2e+0	At4g36890	IRX14 (irregular xylem 14)	O.I.	H.G.	S.X.	Please select
0.09	10.4	TaAffx.11250.2.S1_x_at	At1g09195	-	-	3e-1	At3g24350	SYP32 (SYNTAXIN OF PLANTS 32)	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.25096.1.S1_at	At1g09195	-	-	9e-1	At5g27020	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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