CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.14471.1.A1_a_at

Gene name 60S ribosomal protein L7-1
Homology with Arabidopsis Similar to At2g44120: 60S ribosomal protein L7 (RPL7C) (HF=8e-31)

Module size 6 genes

NF 0.42

%ile 48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 1.00 Zm.14471.1.A1_a_at CF017210 60S ribosomal protein L7-1 - 8e-31 At2g44120 60S ribosomal protein L7 (RPL7C) O.I. H.G. S.X.
0.46 58.4 1.00 Zm.6188.2.S1_at AY108898.1 hypothetical protein LOC100194248 - 4e-2 At1g31140 agl63 (AGAMOUS-LIKE 63) O.I. H.G. S.X.
0.40 48.5 1.00 Zm.4166.1.A1_at BG841131 hypothetical protein LOC100191831 - 1e+0 At1g17145 protein binding / zinc ion binding O.I. H.G. S.X.
0.31 31.6 1.00 Zm.14692.1.A1_s_at BQ539260 hypothetical protein LOC100276042 - 5e+0 At1g09195 - O.I. H.G. S.X.
0.31 31.6 1.00 Zm.14841.1.A1_at AI491693 hypothetical protein LOC100191514 - 2e+0 At2g07681 cytochrome c biogenesis protein, putative O.I. H.G. S.X.
0.30 29.8 1.00 ZmAffx.87.1.A1_at AI665344 - - 1e+1 At5g39330 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	85.8	1.00	Zm.14471.1.A1_a_at	CF017210	60S ribosomal protein L7-1	-	8e-31	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.
0.46	58.4	1.00	Zm.6188.2.S1_at	AY108898.1	hypothetical protein LOC100194248	-	4e-2	At1g31140	agl63 (AGAMOUS-LIKE 63)	O.I.	H.G.	S.X.
0.40	48.5	1.00	Zm.4166.1.A1_at	BG841131	hypothetical protein LOC100191831	-	1e+0	At1g17145	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.31	31.6	1.00	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	O.I.	H.G.	S.X.
0.31	31.6	1.00	Zm.14841.1.A1_at	AI491693	hypothetical protein LOC100191514	-	2e+0	At2g07681	cytochrome c biogenesis protein, putative	O.I.	H.G.	S.X.
0.30	29.8	1.00	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.6 97.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8 88.9 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.8 88.9 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7 88.2 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7 88.2 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.8	88.9	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7	88.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7	88.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the rice gene, Os08g0234000, orthologous to the query gene, Zm.14471.1.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.95 99.6 Os08g0234000 At2g44120 - 60S ribosomal protein L7-1 2e-47 At2g44120 60S ribosomal protein L7 (RPL7C) O.I. H.G. S.X.
0.67 87.2 Os08g0530200 At2g44120 - Ribosomal protein L22/L17 family protein 8e-15 At1g67430 60S ribosomal protein L17 (RPL17B) O.I. H.G. S.X.
0.64 83.4 Os02g0162500 At2g44120 - 40S ribosomal protein S14 (Clone MCH1) 1e-81 At3g52580 40S ribosomal protein S14 (RPS14C) O.I. H.G. S.X.
0.61 81.2 Os03g0424500 At2g44120 - 40S ribosomal protein S19 5e-10 At5g61170 40S ribosomal protein S19 (RPS19C) O.I. H.G. S.X.
0.60 79.7 Os08g0326400 At2g44120 - 60S ribosomal protein L7a 2e-65 At3g62870 60S ribosomal protein L7A (RPL7aB) O.I. H.G. S.X.
0.59 78.0 Os05g0155100 At2g44120 - 60S ribosomal protein L18 5e-4 At2g47570 60S ribosomal protein L18 (RPL18A) O.I. H.G. S.X.
0.59 78.0 Os01g0896800 At2g44120 - 60S ribosomal protein L5 5e+0 At5g25340 unknown protein O.I. H.G. S.X.
0.56 76.3 Os08g0116500 At2g44120 - 60S acidic ribosomal protein P1 (L12) 1e-3 At2g27720 60S acidic ribosomal protein P2 (RPP2A) O.I. H.G. S.X.
0.55 73.7 Os09g0115400 At2g44120 - Poly(A)-binding protein 4e-13 At4g34110 PAB2 (POLY(A) BINDING 2) O.I. H.G. S.X.
0.53 71.3 Os11g0127900 At2g44120 - 40S ribosomal protein S16 2e-9 At3g04230 40S ribosomal protein S16 (RPS16B) O.I. H.G. S.X.
0.52 69.6 Os01g0834500 At2g44120 - 40S ribosomal protein S23 1e-93 At5g02960 40S ribosomal protein S23 (RPS23B) O.I. H.G. S.X.
0.52 69.6 Os12g0508300 At2g44120 - Conserved hypothetical protein 2e-20 At4g33865 40S ribosomal protein S29 (RPS29C) O.I. H.G. S.X.
0.52 69.6 Os07g0150200 At2g44120 - 40S ribosomal protein S12 5e-19 At2g32060 40S ribosomal protein S12 (RPS12C) O.I. H.G. S.X.
0.51 68.7 Os07g0622100 At2g44120 - Ribosomal protein s6 RPS6-2 5e-69 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) O.I. H.G. S.X.
0.51 68.7 Os07g0208000 At2g44120 - 40S ribosomal protein S15a 7e-49 At1g07770 RPS15A (ribosomal protein s15a) O.I. H.G. S.X.
0.50 68.0 Os07g0184300 At2g44120 - 40S ribosomal protein S15 (Fragment) 2e-61 At5g09510 40S ribosomal protein S15 (RPS15D) O.I. H.G. S.X.
0.50 68.0 Os01g0140500 At2g44120 - 60S ribosomal protein L26B 1e+0 At3g49910 60S ribosomal protein L26 (RPL26A) O.I. H.G. S.X.
0.49 64.4 Os04g0398900 At2g44120 - Hypothetical protein 5e-25 At3g61110 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) O.I. H.G. S.X.
0.48 63.7 Os02g0175600 At2g44120 - 60S ribosomal protein L27a-3 2e-12 At1g70600 structural constituent of ribosome O.I. H.G. S.X.
0.48 63.7 Os09g0507800 At2g44120 - 60S ribosomal protein L7a 2e-86 At3g62870 60S ribosomal protein L7A (RPL7aB) O.I. H.G. S.X.
0.47 62.3 Os02g0111700 At2g44120 - Ribosomal protein L37e family protein 7e-3 At1g15250 60S ribosomal protein L37 (RPL37A) O.I. H.G. S.X.
0.47 62.3 Os01g0815800 At2g44120 - - 2e-31 At3g53020 STV1 (SHORT VALVE1) O.I. H.G. S.X.
0.47 62.3 Os10g0411700 At2g44120 - Ribosomal protein S28 5e-3 At3g10090 40S ribosomal protein S28 (RPS28A) O.I. H.G. S.X.
0.46 60.9 Os02g0287000 At2g44120 - 40S ribosomal protein S3a (CYC07 protein) 4e-14 At4g34670 40S ribosomal protein S3A (RPS3aB) O.I. H.G. S.X.
0.46 60.9 Os04g0430100 At2g44120 - Plectin/S10, N-terminal domain containing protein 9e-18 At4g25740 40S ribosomal protein S10 (RPS10A) O.I. H.G. S.X.
0.46 60.9 Os10g0170200 At2g44120 - Ribosomal protein S10 family protein 4e-16 At5g62300 40S ribosomal protein S20 (RPS20C) O.I. H.G. S.X.
0.45 58.8 Os07g0229900 At2g44120 - Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyprotein 7e-12 At1g15930 40S ribosomal protein S12 (RPS12A) O.I. H.G. S.X.
0.44 58.1 Os11g0168200 At2g44120 - 60S ribosomal protein L3 4e-95 At1g43170 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) O.I. H.G. S.X.
0.43 55.4 Os03g0234200 At2g44120 - Ubiquitin fused to ribosomal protein L40 3e-45 At3g52590 UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) O.I. H.G. S.X.
0.41 52.4 Os03g0345200 At2g44120 - 40S ribosomal protein S21 3e-10 At5g27700 structural constituent of ribosome O.I. H.G. S.X.
0.41 52.4 Os01g0328400 At2g44120 - Ubiquitin 7e-66 At2g47110 UBQ6 O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.95	99.6	Os08g0234000	At2g44120	-	60S ribosomal protein L7-1	2e-47	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.
0.67	87.2	Os08g0530200	At2g44120	-	Ribosomal protein L22/L17 family protein	8e-15	At1g67430	60S ribosomal protein L17 (RPL17B)	O.I.	H.G.	S.X.
0.64	83.4	Os02g0162500	At2g44120	-	40S ribosomal protein S14 (Clone MCH1)	1e-81	At3g52580	40S ribosomal protein S14 (RPS14C)	O.I.	H.G.	S.X.
0.61	81.2	Os03g0424500	At2g44120	-	40S ribosomal protein S19	5e-10	At5g61170	40S ribosomal protein S19 (RPS19C)	O.I.	H.G.	S.X.
0.60	79.7	Os08g0326400	At2g44120	-	60S ribosomal protein L7a	2e-65	At3g62870	60S ribosomal protein L7A (RPL7aB)	O.I.	H.G.	S.X.
0.59	78.0	Os05g0155100	At2g44120	-	60S ribosomal protein L18	5e-4	At2g47570	60S ribosomal protein L18 (RPL18A)	O.I.	H.G.	S.X.
0.59	78.0	Os01g0896800	At2g44120	-	60S ribosomal protein L5	5e+0	At5g25340	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	Os08g0116500	At2g44120	-	60S acidic ribosomal protein P1 (L12)	1e-3	At2g27720	60S acidic ribosomal protein P2 (RPP2A)	O.I.	H.G.	S.X.
0.55	73.7	Os09g0115400	At2g44120	-	Poly(A)-binding protein	4e-13	At4g34110	PAB2 (POLY(A) BINDING 2)	O.I.	H.G.	S.X.
0.53	71.3	Os11g0127900	At2g44120	-	40S ribosomal protein S16	2e-9	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.
0.52	69.6	Os01g0834500	At2g44120	-	40S ribosomal protein S23	1e-93	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.
0.52	69.6	Os12g0508300	At2g44120	-	Conserved hypothetical protein	2e-20	At4g33865	40S ribosomal protein S29 (RPS29C)	O.I.	H.G.	S.X.
0.52	69.6	Os07g0150200	At2g44120	-	40S ribosomal protein S12	5e-19	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.
0.51	68.7	Os07g0622100	At2g44120	-	Ribosomal protein s6 RPS6-2	5e-69	At4g31700	RPS6 (RIBOSOMAL PROTEIN S6)	O.I.	H.G.	S.X.
0.51	68.7	Os07g0208000	At2g44120	-	40S ribosomal protein S15a	7e-49	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.
0.50	68.0	Os07g0184300	At2g44120	-	40S ribosomal protein S15 (Fragment)	2e-61	At5g09510	40S ribosomal protein S15 (RPS15D)	O.I.	H.G.	S.X.
0.50	68.0	Os01g0140500	At2g44120	-	60S ribosomal protein L26B	1e+0	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.
0.49	64.4	Os04g0398900	At2g44120	-	Hypothetical protein	5e-25	At3g61110	ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)	O.I.	H.G.	S.X.
0.48	63.7	Os02g0175600	At2g44120	-	60S ribosomal protein L27a-3	2e-12	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.
0.48	63.7	Os09g0507800	At2g44120	-	60S ribosomal protein L7a	2e-86	At3g62870	60S ribosomal protein L7A (RPL7aB)	O.I.	H.G.	S.X.
0.47	62.3	Os02g0111700	At2g44120	-	Ribosomal protein L37e family protein	7e-3	At1g15250	60S ribosomal protein L37 (RPL37A)	O.I.	H.G.	S.X.
0.47	62.3	Os01g0815800	At2g44120	-	-	2e-31	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.
0.47	62.3	Os10g0411700	At2g44120	-	Ribosomal protein S28	5e-3	At3g10090	40S ribosomal protein S28 (RPS28A)	O.I.	H.G.	S.X.
0.46	60.9	Os02g0287000	At2g44120	-	40S ribosomal protein S3a (CYC07 protein)	4e-14	At4g34670	40S ribosomal protein S3A (RPS3aB)	O.I.	H.G.	S.X.
0.46	60.9	Os04g0430100	At2g44120	-	Plectin/S10, N-terminal domain containing protein	9e-18	At4g25740	40S ribosomal protein S10 (RPS10A)	O.I.	H.G.	S.X.
0.46	60.9	Os10g0170200	At2g44120	-	Ribosomal protein S10 family protein	4e-16	At5g62300	40S ribosomal protein S20 (RPS20C)	O.I.	H.G.	S.X.
0.45	58.8	Os07g0229900	At2g44120	-	Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyprotein	7e-12	At1g15930	40S ribosomal protein S12 (RPS12A)	O.I.	H.G.	S.X.
0.44	58.1	Os11g0168200	At2g44120	-	60S ribosomal protein L3	4e-95	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.
0.43	55.4	Os03g0234200	At2g44120	-	Ubiquitin fused to ribosomal protein L40	3e-45	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	O.I.	H.G.	S.X.
0.41	52.4	Os03g0345200	At2g44120	-	40S ribosomal protein S21	3e-10	At5g27700	structural constituent of ribosome	O.I.	H.G.	S.X.
0.41	52.4	Os01g0328400	At2g44120	-	Ubiquitin	7e-66	At2g47110	UBQ6	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

Back to the CoP portal site

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Gene ID	Zm.14471.1.A1_a_at
Gene name	60S ribosomal protein L7-1
Homology with Arabidopsis	Similar to At2g44120: 60S ribosomal protein L7 (RPL7C) (HF=8e-31)
Module size	6 genes
NF	0.42
%ile	48.4

Co-expression analysis

Gene ID Zm.14471.1.A1_a_at Gene name 60S ribosomal protein L7-1 Homology with ArabidopsisSimilar to At2g44120: 60S ribosomal protein L7 (RPL7C) (HF=8e-31) Module size 6 genes NF 0.42 %ile 48.4

Co-expressed genes

Click More genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_vinifera

Gene ID Zm.14471.1.A1_a_at

Gene name 60S ribosomal protein L7-1
Homology with Arabidopsis Similar to At2g44120: 60S ribosomal protein L7 (RPL7C) (HF=8e-31)

Module size 6 genes

NF 0.42

%ile 48.4

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera