CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.14471.1.A1_a_at

Gene name 60S ribosomal protein L7-1
Homology with Arabidopsis Similar to At2g44120: 60S ribosomal protein L7 (RPL7C) (HF=8e-31)

Module size 6 genes

NF 0.42

%ile 48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 1.00 Zm.14471.1.A1_a_at CF017210 60S ribosomal protein L7-1 - 8e-31 At2g44120 60S ribosomal protein L7 (RPL7C) O.I. H.G. S.X.
0.46 58.4 1.00 Zm.6188.2.S1_at AY108898.1 hypothetical protein LOC100194248 - 4e-2 At1g31140 agl63 (AGAMOUS-LIKE 63) O.I. H.G. S.X.
0.40 48.5 1.00 Zm.4166.1.A1_at BG841131 hypothetical protein LOC100191831 - 1e+0 At1g17145 protein binding / zinc ion binding O.I. H.G. S.X.
0.31 31.6 1.00 Zm.14692.1.A1_s_at BQ539260 hypothetical protein LOC100276042 - 5e+0 At1g09195 - O.I. H.G. S.X.
0.31 31.6 1.00 Zm.14841.1.A1_at AI491693 hypothetical protein LOC100191514 - 2e+0 At2g07681 cytochrome c biogenesis protein, putative O.I. H.G. S.X.
0.30 29.8 1.00 ZmAffx.87.1.A1_at AI665344 - - 1e+1 At5g39330 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.6 97.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8 95.5 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7 93.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8 88.9 GSM205371 Mo17xB73 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.8 88.9 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7 88.2 GSM205373 Mo17 13 DAP endosperm tissue biological replicate 3 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7 88.2 GSM205367 Mo17xB73 13 DAP endosperm tissue biological replicate 1 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the barley gene, Contig1348_at, orthologous to the query gene, Zm.14471.1.A1_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 94.8 Contig1348_at At2g44120 - - 7e-31 At2g44120 60S ribosomal protein L7 (RPL7C) O.I. H.G. S.X.
0.74 89.1 Contig23296_at At2g44120 - - 1e-17 At1g02190 CER1 protein, putative O.I. H.G. S.X.
0.72 87.4 HT11O20u_at At2g44120 - - 1e-2 At4g04040 MEE51 (maternal effect embryo arrest 51) O.I. H.G. S.X.
0.71 87.1 HU12L19u_at At2g44120 - - 4e+0 At5g46790 unknown protein O.I. H.G. S.X.
0.69 85.5 EBem06_SQ002_C05_at At2g44120 - - 4e+0 At5g55131 - O.I. H.G. S.X.
0.67 84.7 Contig23458_at At2g44120 - - 5e+0 At5g48950 thioesterase family protein O.I. H.G. S.X.
0.63 80.3 HVSMEm0004M18r2_at At2g44120 - - 2e+0 At3g09970 calcineurin-like phosphoesterase family protein O.I. H.G. S.X.
0.56 74.3 HS05N06r_at At2g44120 - - 9e-1 At1g79110 protein binding / zinc ion binding O.I. H.G. S.X.
0.56 74.3 HA06j10r_at At2g44120 - - 2e+0 At4g21920 unknown protein O.I. H.G. S.X.
0.53 69.7 HT11A16u_x_at At2g44120 - - 2e+0 At1g64080 unknown protein O.I. H.G. S.X.
0.52 68.3 9507414_R_4264-4644_at At2g44120 - - 1e+1 At5g06320 NHL3 O.I. H.G. S.X.
0.51 67.5 Contig21533_at At2g44120 - - 2e+0 At1g24000 Bet v I allergen family protein O.I. H.G. S.X.
0.50 66.9 HW03P01u_at At2g44120 - - 1e+1 At5g13190 - O.I. H.G. S.X.
0.44 58.9 S0000800072B12F1_at At2g44120 - - 9e+0 At1g07476 unknown protein O.I. H.G. S.X.
0.43 56.4 HVSMEf0019I03r2_s_at At2g44120 - - 4e+0 At3g57770 protein kinase, putative O.I. H.G. S.X.
0.43 56.4 Contig17900_at At2g44120 - - 6e+0 At4g05170 DNA binding / transcription factor O.I. H.G. S.X.
0.40 53.1 EBem04_SQ003_H15_at At2g44120 - - 3e+0 At5g33806 unknown protein O.I. H.G. S.X.
0.38 49.5 HVSMEg0002G01r2_x_at At2g44120 - - 6e+0 At5g39360 EDL2 (EID1-like 2) O.I. H.G. S.X.
0.37 47.9 HV_CEa0014H05r2_at At2g44120 - - 3e+0 At5g64850 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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