Co-expression analysis

Gene ID	Zm.14471.1.A1_a_at
Gene name	60S ribosomal protein L7-1
Homology with Arabidopsis	Similar to At2g44120: 60S ribosomal protein L7 (RPL7C) (HF=8e-31)
Module size	6 genes
NF	0.42
%ile	48.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	1.00	Zm.14471.1.A1_a_at	CF017210	60S ribosomal protein L7-1	-	8e-31	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.	Please select
0.46	58.4	1.00	Zm.6188.2.S1_at	AY108898.1	hypothetical protein LOC100194248	-	4e-2	At1g31140	agl63 (AGAMOUS-LIKE 63)	O.I.	H.G.	S.X.	Please select
0.40	48.5	1.00	Zm.4166.1.A1_at	BG841131	hypothetical protein LOC100191831	-	1e+0	At1g17145	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.31	31.6	1.00	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	1.00	Zm.14841.1.A1_at	AI491693	hypothetical protein LOC100191514	-	2e+0	At2g07681	cytochrome c biogenesis protein, putative	O.I.	H.G.	S.X.	Please select
0.30	29.8	1.00	ZmAffx.87.1.A1_at	AI665344	-	-	1e+1	At5g39330	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.8	88.9	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7	88.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
1.7	88.2	GSM205367	Mo17xB73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the soybean gene, Gma.6569.1.S1_s_at, orthologous to the query gene, Zm.14471.1.A1_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.68	86.4	Gma.6569.1.S1_s_at	At2g44120	-	-	2e-59	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.82	91.9	Gma.1310.1.S1_s_at	At2g44120	-	-	3e-17	At1g27400	60S ribosomal protein L17 (RPL17A)	O.I.	H.G.	S.X.	Please select
0.77	90.3	Gma.10930.2.S1_s_at	At2g44120	-	-	1e-44	At3g02080	40S ribosomal protein S19 (RPS19A)	O.I.	H.G.	S.X.	Please select
0.74	89.2	GmaAffx.93634.1.S1_x_at	At2g44120	-	-	4e-22	At5g04800	40S ribosomal protein S17 (RPS17D)	O.I.	H.G.	S.X.	Please select
0.74	89.2	Gma.1549.1.S1_at	At2g44120	-	-	1e-156	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.72	88.1	Gma.11173.1.S1_at	At2g44120	-	-	6e-9	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.	Please select
0.70	87.1	GmaAffx.89925.1.S1_x_at	At2g44120	40S ribosomal S4 protein	-	2e-20	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.70	87.1	Gma.11033.1.S1_at	At2g44120	-	-	8e-15	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.69	86.8	GmaAffx.43889.1.S1_s_at	At2g44120	-	-	3e-26	At4g13170	60S ribosomal protein L13A (RPL13aC)	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.584.1.S1_at	At2g44120	-	-	5e-47	At1g67430	60S ribosomal protein L17 (RPL17B)	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.11157.2.S1_at	At2g44120	-	-	1e-39	At4g16720	60S ribosomal protein L15 (RPL15A)	O.I.	H.G.	S.X.	Please select
0.59	79.5	GmaAffx.3329.1.A1_s_at	At2g44120	-	-	3e-3	At3g03460	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	78.8	GmaAffx.93136.1.S1_x_at	At2g44120	-	-	1e-52	At2g47110	UBQ6	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.8045.1.S1_a_at	At2g44120	-	-	6e-21	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.54	74.8	Gma.11173.1.S1_x_at	At2g44120	-	-	6e-9	At3g49910	60S ribosomal protein L26 (RPL26A)	O.I.	H.G.	S.X.	Please select
0.52	73.1	Gma.11169.3.S1_s_at	At2g44120	-	-	1e-32	At2g36170	ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A)	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.6575.1.S1_at	At2g44120	-	-	2e-15	At5g46430	60S ribosomal protein L32 (RPL32B)	O.I.	H.G.	S.X.	Please select
0.42	59.3	Gma.6740.1.S1_x_at	At2g44120	-	-	5e-83	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.16192.1.S1_at	At2g44120	-	-	2e-58	At2g47610	60S ribosomal protein L7A (RPL7aA)	O.I.	H.G.	S.X.	Please select
0.37	51.7	Gma.5875.2.S1_at	At2g44120	-	-	3e-26	At4g26230	60S ribosomal protein L31 (RPL31B)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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