Co-expression analysis

Gene ID	Zm.14419.1.A1_s_at
Gene name	elongation factor 1-alpha
Homology with Arabidopsis	Similar to At1g07940: elongation factor 1-alpha / EF-1-alpha (HF=0)
Module size	7 genes
NF	0.09
%ile	4.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.85	Zm.14419.1.A1_s_at	U76259.1	elongation factor 1-alpha	-	0	At1g07940	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.85	Zm.1442.2.S1_at	AW267580	caltractin	-	2e-15	At3g50360	ATCEN2 (CENTRIN2)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.93	Zm.1442.1.A1_at	BM080134	peroxisomal fatty acid beta-oxidation multifunctional protein	-	2e-18	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.91	Zm.16819.1.A1_at	CF042698	chromatin modification-related protein EAF3	-	2e-4	At4g37280	MRG family protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.90	Zm.9719.1.A1_at	BM332935	hypothetical protein LOC100273981	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.90	Zm.16392.1.A1_at	CF272867	-	-	3e+0	At4g00420	double-stranded RNA-binding domain (DsRBD)-containing protein	O.I.	H.G.	S.X.	Please select
0.02	0.7	0.90	Zm.878.1.S1_at	AI855310	60S ribosomal protein L35	-	6e-3	At2g39390	60S ribosomal protein L35 (RPL35B)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.6	92.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.0	90.2	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
1.9	89.6	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
1.8	88.9	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
1.7	88.2	GSM206303	Upper pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
1.7	88.2	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.7	88.2	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.7	88.2	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.7	88.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
1.6	87.4	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage