Co-expression analysis

Gene ID Zm.14407.2.S1_at
Gene name hypothetical protein LOC100272648
Homology with ArabidopsisSimilar to At1g56070: LOS1 (HF=3e-140)
Module size 6 genes
NF 0.55
%ile 72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.98Zm.14407.2.S1_atAW424519hypothetical protein LOC100272648-3e-140At1g56070LOS1O.I.H.G.S.X.
0.6785.80.98Zm.6562.2.A1_a_atCK347763plasma membrane associated protein-6e+0At5g56990-O.I.H.G.S.X.
0.5065.70.98Zm.4878.1.A1_atAW288995hsc70-interacting protein-6e-8At4g22670AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)O.I.H.G.S.X.
0.4455.70.98Zm.12236.1.A1_atCA830514hypothetical protein LOC100194199-5e+0At3g13970APG12B (AUTOPHAGY 12 B)O.I.H.G.S.X.
0.4048.50.98Zm.9237.1.A1_atBM350875--4e-1At3g077503' exoribonuclease family domain 1-containing proteinO.I.H.G.S.X.
0.2318.60.98Zm.4823.1.A1_atCD999070--4e-23At1g76550pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putativeO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5571.60.95Zm.19067.1.S1_atAY107493.1hypothetical protein LOC100279588-3e+0At5g20810auxin-responsive protein, putative / small auxin up RNA (SAUR_B)O.I.H.G.S.X.
0.5571.60.96Zm.19213.1.S1_atCO518628hypothetical protein LOC100192615-1e-2At3g49430SRp34a (Ser/Arg-rich protein 34a)O.I.H.G.S.X.
0.5571.60.98Zm.5785.4.A1_atCA403256hypothetical protein LOC100279822-4e-117At1g02500SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1)O.I.H.G.S.X.
0.5065.70.97Zm.6166.1.A1_a_atCD996417hypothetical protein LOC100193965-3e-18At4g35000APX3 (ASCORBATE PEROXIDASE 3)O.I.H.G.S.X.
0.4455.70.97Zm.14103.2.A1_atCF005933--8e-5At3g43740leucine-rich repeat family proteinO.I.H.G.S.X.
0.4455.70.97Zm.6045.7.A1_a_atCK347781hypothetical protein LOC100216946 /// guanine nucleotide-binding protein beta subunit-like protein-3e-8At1g18080ATARCAO.I.H.G.S.X.
0.4455.70.97Zm.1719.1.S1_atAW400223--7e-1At2g0125060S ribosomal protein L7 (RPL7B)O.I.H.G.S.X.
0.4352.80.97Zm.9238.1.A1_atCO533275--5e-2At2g23320WRKY15O.I.H.G.S.X.
0.4251.30.97Zm.5167.1.A1_a_atAY108449.1caffeoyl-CoA O-methyltransferase 1-9e+0At2g04425LCR82 (Low-molecular-weight cysteine-rich 82)O.I.H.G.S.X.
0.4048.50.95Zm.18513.1.S1_atCO531043hypothetical protein LOC100192940-3e+0At3g60670zinc-binding protein, putativeO.I.H.G.S.X.
0.4048.50.96Zm.5309.1.A1_a_atAI619196hypothetical protein LOC100192865 /// proteasome subunit beta type 4-7e-10At1g56450PBG1O.I.H.G.S.X.
0.4048.50.96Zm.6476.1.A1_atBG266009hypothetical protein LOC100275764-2e+1At3g48231LCR48 (Low-molecular-weight cysteine-rich 48)O.I.H.G.S.X.
0.4048.50.97Zm.17905.1.S1_atAY104787.1disulfide oxidoreductase/ monooxygenase-2e-6At1g12160flavin-containing monooxygenase family protein / FMO family proteinO.I.H.G.S.X.
0.3641.30.97Zm.3851.1.A1_atCK394813--4e-9At5g40670PQ-loop repeat family protein / transmembrane family proteinO.I.H.G.S.X.
0.3641.30.98Zm.7679.1.A1_atBM079456hypothetical protein LOC100273504-3e-12At5g19820emb2734 (embryo defective 2734)O.I.H.G.S.X.
0.3538.90.98Zm.5166.1.S1_atAI612220--1e+0At2g19690PLA2-BETA (PHOSPHOLIPASE A2-BETA)O.I.H.G.S.X.
0.3538.90.96Zm.19244.1.S1_atCO526426--2e-1At4g02690glutamate bindingO.I.H.G.S.X.
0.3336.00.95Zm.9329.1.A1_atBM351235--5e+0At5g59870HTA6O.I.H.G.S.X.
0.3336.00.96Zm.11727.1.A1_atBM380238--5e+0At5g10320unknown proteinO.I.H.G.S.X.
0.3336.00.97Zm.445.2.S1_a_atAF457968.1lipoxygenase-4e+0At5g47600heat shock protein-relatedO.I.H.G.S.X.
0.3233.40.97Zm.4351.1.S1_atAY104814.1Hypothetical protein LOC100191604-2e-1At1g10040unknown proteinO.I.H.G.S.X.
0.3233.40.98Zm.12992.1.A1_atCA402979--2e+0At3g17365catalytic/ methyltransferaseO.I.H.G.S.X.
0.3131.60.96Zm.17724.3.S1_atCK370253--2e-1At1g04985unknown proteinO.I.H.G.S.X.
0.3131.60.96Zm.10869.1.S1_atBM074344--3e-1At3g07510unknown proteinO.I.H.G.S.X.
0.3131.60.97ZmAffx.693.1.A1_atAI737419hypothetical protein LOC100191981-8e-1At5g24130unknown proteinO.I.H.G.S.X.
0.3131.60.97--O.I.H.G.S.X.
0.3131.60.97Zm.13671.1.S1_atCD001892Hypothetical protein LOC100193899-5e+0At5g42850-O.I.H.G.S.X.
0.3131.60.98Zm.17277.1.S1_atCF273093--1e-45At5g57110ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)O.I.H.G.S.X.
0.3131.60.98Zm.4001.1.A1_atAY243475.1superal1-7e-16At1g17730VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)O.I.H.G.S.X.
0.3029.80.96Zm.13448.1.A1_atAY109256.1--1e+0At4g14815protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2928.10.94Zm.17920.1.A1_atCK827004hypothetical protein LOC100216723-1e+0At3g23710chloroplast inner membrane import protein Tic22, putativeO.I.H.G.S.X.
0.2928.10.97Zm.3583.2.S1_atAY105229.1Hypothetical protein LOC100191673-2e+0At1g14980CPN10 (CHAPERONIN 10)O.I.H.G.S.X.
0.2724.60.96Zm.12587.1.S1_s_atCF024578glycosyltransferase-3e-5At3g18170transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.2724.60.97Zm.161.2.S1_a_atX70153.1protein b-32-9e-2At1g65270unknown proteinO.I.H.G.S.X.
0.2622.70.96Zm.3983.2.A1_atAI820263--8e-1At3g60510enoyl-CoA hydratase/isomerase family proteinO.I.H.G.S.X.
0.2622.70.97Zm.17280.1.S1_atCK369569--7e-2At1g03900ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)O.I.H.G.S.X.
0.2622.70.97Zm.12789.1.A1_atCA398899--9e-3At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)O.I.H.G.S.X.
0.2521.30.96Zm.2867.1.S1_atAY107561.1hypothetical protein LOC100280394-8e-2At1g28190unknown proteinO.I.H.G.S.X.
0.2521.30.97ZmAffx.1025.1.A1_atAI770423--8e-1At2g25312-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.797.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.497.0GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.696.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.090.2GSM253245ZM_12h_Mock_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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