Co-expression analysis

Gene ID	Zm.14407.2.S1_at
Gene name	hypothetical protein LOC100272648
Homology with Arabidopsis	Similar to At1g56070: LOS1 (HF=3e-140)
Module size	6 genes
NF	0.55
%ile	72.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.14407.2.S1_at	AW424519	hypothetical protein LOC100272648	-	3e-140	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.6562.2.A1_a_at	CK347763	plasma membrane associated protein	-	6e+0	At5g56990	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.4878.1.A1_at	AW288995	hsc70-interacting protein	-	6e-8	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.12236.1.A1_at	CA830514	hypothetical protein LOC100194199	-	5e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.98	Zm.4823.1.A1_at	CD999070	-	-	4e-23	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28016.1.S1_x_at, orthologous to the query gene, Zm.14407.2.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.85	93.8	Ta.28016.1.S1_x_at	At1g56070	-	-	0	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.30787.1.S1_at	At1g56070	-	-	6e-38	At1g09690	60S ribosomal protein L21 (RPL21C)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.1335.2.S1_x_at	At1g56070	-	-	2e-86	At5g02960	40S ribosomal protein S23 (RPS23B)	O.I.	H.G.	S.X.	Please select
0.56	78.6	Ta.22961.1.S1_a_at	At1g56070	-	-	3e-20	At2g32060	40S ribosomal protein S12 (RPS12C)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.24130.2.S1_x_at	At1g56070	60S ribosomal protein L15	-	6e-41	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.54	75.5	Ta.15265.1.S1_at	At1g56070	-	-	3e-124	At1g43170	ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.53	74.9	Ta.28713.1.S1_x_at	At1g56070	-	-	7e-9	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.23429.1.S1_at	At1g56070	Ribosomal protein S7	-	5e-5	At1g48830	40S ribosomal protein S7 (RPS7A)	O.I.	H.G.	S.X.	Please select
0.52	73.7	Ta.24826.3.S1_at	At1g56070	-	-	8e-34	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.51	73.0	Ta.23073.1.S1_at	At1g56070	-	-	6e-20	At1g18080	ATARCA	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.28317.1.S1_x_at	At1g56070	-	-	9e-12	At1g33120	60S ribosomal protein L9 (RPL90B)	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.13254.2.A1_at	At1g56070	-	-	5e-35	At3g53020	STV1 (SHORT VALVE1)	O.I.	H.G.	S.X.	Please select
0.48	69.0	Ta.28341.1.S1_at	At1g56070	-	-	5e-1	At3g04230	40S ribosomal protein S16 (RPS16B)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.28331.1.S1_at	At1g56070	ribosomal protein L2	-	1e-66	At2g18020	EMB2296 (embryo defective 2296)	O.I.	H.G.	S.X.	Please select
0.47	67.9	Ta.1924.1.S1_x_at	At1g56070	-	-	2e-35	At5g58420	40S ribosomal protein S4 (RPS4D)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.24826.3.S1_x_at	At1g56070	-	-	8e-34	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.13683.1.S1_at	At1g56070	-	-	7e-25	At2g19740	60S ribosomal protein L31 (RPL31A)	O.I.	H.G.	S.X.	Please select
0.46	66.8	TaAffx.128418.67.S1_s_at	At1g56070	-	-	2e-17	At4g30800	40S ribosomal protein S11 (RPS11B)	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.14635.1.S1_a_at	At1g56070	ribosomal Pr 117	-	9e-81	At2g33370	60S ribosomal protein L23 (RPL23B)	O.I.	H.G.	S.X.	Please select
0.45	65.2	Ta.27765.4.S1_x_at	At1g56070	Ribosomal protein L39	-	3e-20	At4g31985	60S ribosomal protein L39 (RPL39C)	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.1924.2.S1_x_at	At1g56070	-	-	4e-35	At5g07090	40S ribosomal protein S4 (RPS4B)	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.659.5.S1_at	At1g56070	-	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.14274.1.S1_a_at	At1g56070	hypothetical LOC543076	-	3e-40	At5g35530	40S ribosomal protein S3 (RPS3C)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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