| Gene ID | Zm.14396.1.S1_at |
| Gene name | photosystem I subunit d1 |
| Homology with Arabidopsis | Similar to At1g03130: PSAD-2 (photosystem I subunit D-2) (HF=1e-3) |
| Module size | 6 genes |
| NF | 0.36 |
| %ile | 37.3 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.67 | 85.8 | 0.94 | Zm.14396.1.S1_at | AF147726.1 | photosystem I subunit d1 | - | 1e-3 | At1g03130 | PSAD-2 (photosystem I subunit D-2) | O.I. | H.G. | S.X. | |
| 0.67 | 85.8 | 0.95 | Zm.15432.1.S1_at | CA401222 | - | - | 9e+0 | At5g02080 | DNA/panthothenate metabolism flavoprotein family protein | O.I. | H.G. | S.X. | |
| 0.44 | 55.7 | 0.97 | Zm.3952.1.S1_at | AW155692 | - | - | 1e-4 | At2g19950 | GC1 (Golgin Candidate 1) | O.I. | H.G. | S.X. | |
| 0.44 | 55.7 | 0.94 | Zm.19061.1.A1_at | CO532046 | hypothetical protein LOC100193436 | - | 5e+0 | At3g62370 | unknown protein | O.I. | H.G. | S.X. | |
| 0.40 | 48.5 | 0.96 | Zm.33.1.S1_s_at | M12144.1 | alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein | - | 7e-1 | At1g18265 | unknown protein | O.I. | H.G. | S.X. | |
| 0.14 | 7.7 | 0.93 | Zm.16488.1.A1_at | CD440410 | hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4 | - | 7e+0 | At5g52160 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 3.3 | 94.7 | GSM320453 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.3 | 94.7 | GSM320451 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.2 | 94.5 | GSM320450 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.0 | 94.0 | GSM320452 | protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 3.0 | 94.0 | GSM320447 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.8 | 93.5 | GSM320455 | protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.8 | 93.5 | GSM320449 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.8 | 93.5 | GSM253282 | ZM_8d_SG200_3Alu_III | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| 2.5 | 92.6 | GSM320448 | protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 | GSE12770 | Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes | |
| 2.3 | 91.7 | GSM253280 | ZM_8d_SG200_3Alu_I | GSE10023 | Maize gene expression during infection with Ustilago maydis | |
| VF | %ile | Gene ID | Repr. ID | Gene Name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.70 | 88.6 | 1611733_s_at | At1g03130 | hypothetical protein LOC100240928 | - | 2e-12 | At1g03130 | PSAD-2 (photosystem I subunit D-2) | O.I. | H.G. | S.X. | |
| 0.74 | 91.0 | 1617646_at | At1g03130 | hypothetical protein LOC100261565 | - | 4e-26 | At5g16400 | ATF2 | O.I. | H.G. | S.X. | |
| 0.63 | 84.3 | 1620744_at | At1g03130 | hypothetical protein LOC100248911 | - | 2e-6 | At1g20340 | DRT112 | O.I. | H.G. | S.X. | |
| 0.59 | 80.6 | 1613494_s_at | At1g03130 | probable oxygen-evolving enhancer protein 2 | - | 2e-22 | At1g06680 | PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) | O.I. | H.G. | S.X. | |
| 0.55 | 77.3 | 1611582_s_at | At1g03130 | hypothetical protein LOC100245393 | - | 5e-5 | At1g44575 | NPQ4 (NONPHOTOCHEMICAL QUENCHING) | O.I. | H.G. | S.X. | |
| 0.43 | 61.5 | 1619903_at | At1g03130 | hypothetical protein LOC100263275 | - | 8e-71 | At3g54890 | LHCA1 | O.I. | H.G. | S.X. | |
| 0.41 | 58.7 | 1610360_at | At1g03130 | hypothetical protein LOC100243957 | - | 9e-5 | At2g06520 | PSBX (photosystem II subunit X) | O.I. | H.G. | S.X. | |
| 0.37 | 51.7 | 1614598_at | At1g03130 | hypothetical protein LOC100266604 | - | 2e-4 | At3g08940 | LHCB4.2 (light harvesting complex PSII) | O.I. | H.G. | S.X. |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Oryza_sativa |
| Populus_trichocarpa |
| Triticum_aestivum |
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