Co-expression analysis

Gene ID	Zm.14396.1.S1_at
Gene name	photosystem I subunit d1
Homology with Arabidopsis	Similar to At1g03130: PSAD-2 (photosystem I subunit D-2) (HF=1e-3)
Module size	6 genes
NF	0.36
%ile	37.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.94	Zm.14396.1.S1_at	AF147726.1	photosystem I subunit d1	-	1e-3	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.15432.1.S1_at	CA401222	-	-	9e+0	At5g02080	DNA/panthothenate metabolism flavoprotein family protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.3952.1.S1_at	AW155692	-	-	1e-4	At2g19950	GC1 (Golgin Candidate 1)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.94	Zm.19061.1.A1_at	CO532046	hypothetical protein LOC100193436	-	5e+0	At3g62370	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.33.1.S1_s_at	M12144.1	alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein	-	7e-1	At1g18265	unknown protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.93	Zm.16488.1.A1_at	CD440410	hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4	-	7e+0	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	94.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.5	92.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.24304.2.S1_a_at, orthologous to the query gene, Zm.14396.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.79	91.3	Ta.24304.2.S1_a_at	At1g03130	-	-	3e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	O.I.	H.G.	S.X.	Please select
0.92	98.5	Ta.27751.6.S1_at	At1g03130	-	-	1e-28	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.91	98.2	Ta.1130.1.S1_a_at	At1g03130	-	-	2e-7	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.88	94.4	Ta.1969.1.S1_a_at	At1g03130	-	-	5e-7	At2g20260	PSAE-2 (photosystem I subunit E-2)	O.I.	H.G.	S.X.	Please select
0.87	94.2	Ta.30727.1.S1_at	At1g03130	-	-	1e-39	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	O.I.	H.G.	S.X.	Please select
0.85	93.8	Ta.506.1.S1_a_at	At1g03130	-	-	6e-48	At4g38970	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.85	93.8	Ta.27751.2.S1_x_at	At1g03130	-	-	4e-27	At2g34420	LHB1B2	O.I.	H.G.	S.X.	Please select
0.81	92.4	Ta.1130.2.S1_x_at	At1g03130	-	-	5e-26	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.70	87.2	Ta.1130.3.S1_x_at	At1g03130	-	-	3e-33	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.22831.1.S1_at	At1g03130	membrane protein-like	-	9e-12	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.22831.1.S1_x_at	At1g03130	membrane protein-like	-	9e-12	At1g08380	PSAO (photosystem I subunit O)	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.27793.2.S1_x_at	At1g03130	Photosystem II polypeptide	-	1e-1	At1g79040	PSBR (photosystem II subunit R)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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