CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.14396.1.S1_at

Gene name photosystem I subunit d1
Homology with Arabidopsis Similar to At1g03130: PSAD-2 (photosystem I subunit D-2) (HF=1e-3)

Module size 6 genes

NF 0.36

%ile 37.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.94 Zm.14396.1.S1_at AF147726.1 photosystem I subunit d1 - 1e-3 At1g03130 PSAD-2 (photosystem I subunit D-2) O.I. H.G. S.X.
0.67 85.8 0.95 Zm.15432.1.S1_at CA401222 - - 9e+0 At5g02080 DNA/panthothenate metabolism flavoprotein family protein O.I. H.G. S.X.
0.44 55.7 0.97 Zm.3952.1.S1_at AW155692 - - 1e-4 At2g19950 GC1 (Golgin Candidate 1) O.I. H.G. S.X.
0.44 55.7 0.94 Zm.19061.1.A1_at CO532046 hypothetical protein LOC100193436 - 5e+0 At3g62370 unknown protein O.I. H.G. S.X.
0.40 48.5 0.96 Zm.33.1.S1_s_at M12144.1 alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein - 7e-1 At1g18265 unknown protein O.I. H.G. S.X.
0.14 7.7 0.93 Zm.16488.1.A1_at CD440410 hypothetical protein LOC100277264 /// hypothetical protein LOC100280361 /// nonspecific lipid-transfer protein 4 - 7e+0 At5g52160 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 94.7 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2 94.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0 94.0 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8 93.5 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
2.5 92.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3 91.7 GSM253280 ZM_8d_SG200_3Alu_I GSE10023 Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.71066.5.A1_s_at, orthologous to the query gene, Zm.14396.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.64 88.4 PtpAffx.71066.5.A1_s_at At1g03130 hypothetical protein - 1e-16 At4g02770 PSAD-1 (photosystem I subunit D-1) O.I. H.G. S.X.
0.87 97.5 PtpAffx.4650.2.A1_at At1g03130 hypothetical protein - 2e-44 At4g01150 unknown protein O.I. H.G. S.X.
0.85 97.2 Ptp.4452.2.A1_s_at At1g03130 hypothetical protein - 1e-10 At4g28750 PSAE-1 (PSA E1 KNOCKOUT) O.I. H.G. S.X.
0.81 96.1 Ptp.5386.1.S1_s_at At1g03130 hypothetical protein - 2e-12 At3g48570 protein transport protein SEC61 gamma subunit, putative O.I. H.G. S.X.
0.80 96.0 Ptp.3793.1.S1_at At1g03130 precursor of carboxylase h-protein 3, glycine decarboxylase complex - 9e-12 At2g35370 GDCH O.I. H.G. S.X.
0.79 95.3 PtpAffx.249.164.A1_s_at At1g03130 hypothetical protein - 2e-33 At1g06680 PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1) O.I. H.G. S.X.
0.77 94.9 PtpAffx.148341.1.S1_s_at At1g03130 light-harvesting complex II protein Lhcb5 - 2e-17 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) O.I. H.G. S.X.
0.76 94.3 Ptp.5911.1.S1_s_at At1g03130 hypothetical protein - 2e-39 At1g52230 PSAH2 (PHOTOSYSTEM I SUBUNIT H2) O.I. H.G. S.X.
0.76 94.3 Ptp.2148.1.S1_s_at At1g03130 hypothetical protein - 3e-27 At1g31330 PSAF (photosystem I subunit F) O.I. H.G. S.X.
0.75 94.1 Ptp.5351.1.S1_at At1g03130 hypothetical protein - 6e-28 At4g01150 unknown protein O.I. H.G. S.X.
0.69 91.5 PtpAffx.5813.1.S1_at At1g03130 hypothetical protein - 8e-21 At3g27850 RPL12-C (ribosomal protein l12-c) O.I. H.G. S.X.
0.67 91.1 Ptp.5165.1.A1_s_at At1g03130 - - 2e-15 At2g39730 RCA (RUBISCO ACTIVASE) O.I. H.G. S.X.
0.67 91.1 Ptp.5232.1.S1_at At1g03130 light-harvesting complex I protein Lhca1 - 4e-48 At3g54890 LHCA1 O.I. H.G. S.X.
0.60 86.0 PtpAffx.381.1.S1_a_at At1g03130 hypothetical protein - 3e-105 At5g46110 APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2) O.I. H.G. S.X.
0.59 84.9 Ptp.1898.1.S1_at At1g03130 light-harvesting complex II protein Lhcb5 - 1e-91 At4g10340 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera

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