Co-expression analysis

Gene ID	Zm.1414.1.S1_at
Gene name	hypothetical protein LOC100191409
Homology with Arabidopsis	Similar to At2g21185: unknown protein (HF=2e+0)
Module size	26 genes
NF	0.37
%ile	40.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.78	92.5	0.95	Zm.1414.1.S1_at	BQ293805	hypothetical protein LOC100191409	-	2e+0	At2g21185	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.95	Zm.16909.2.A1_at	AI649443	60S ribosomal protein L27a-3	-	6e-31	At1g70600	structural constituent of ribosome	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.96	Zm.14441.1.A1_at	CO531121	HAD-superfamily hydrolase, subfamily IIA	-	3e-3	At5g10460	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.96	Zm.377.1.A1_at	AI714846	shaggy kinase homolog	-	2e-35	At5g26751	ATSK11	O.I.	H.G.	S.X.	Please select
0.51	66.4	0.96	Zm.13574.1.S1_at	AY107909.1	-	-	2e-12	At3g17420	GPK1	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.19107.1.A1_at	BM332383	hypothetical protein LOC100272386	-	8e-4	At1g15030	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.95	Zm.3132.2.S1_at	AY109250.1	hypothetical protein LOC100273073	-	4e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.96	ZmAffx.599.1.S1_at	AI715027	-	-	3e+0	At5g48820	ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.4278.1.A1_at	AI834022	hypothetical protein LOC100279402	-	1e+1	At5g05550	transcription factor	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.96	Zm.5218.1.A1_at	AY111426.1	-	-	3e+0	At2g30130	ASL5	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.5185.1.A1_at	AI711952	hypothetical protein LOC100280305	-	1e-36	At3g11945	homogentisate farnesyltransferase/ homogentisate geranylgeranyltransferase/ homogentisate solanesyltransferase	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.96	Zm.10269.1.S1_at	BM660878	-	-	4e+0	At2g05840	PAA2 (20S PROTEASOME SUBUNIT PAA2)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.3286.1.A1_at	BG265986	-	-	2e+0	At4g32551	LUG (LEUNIG)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.3885.1.S1_at	CK145224	Pectin methylesterase1	-	6e-2	At3g06830	pectinesterase family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.96	Zm.4560.2.S1_at	AY106577.1	-	-	2e-11	At3g59350	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.14471.2.A1_x_at	CF635954	60S ribosomal protein L7-2	-	4e-33	At2g44120	60S ribosomal protein L7 (RPL7C)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.6455.1.A1_at	AI619337	-	-	3e-17	At3g63280	ATNEK4 (NIMA-RELATED KINASE 4)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.1046.1.S1_at	CF633990	-	-	2e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.91.1.S1_at	AY111773.1	hypothetical protein LOC100192631	-	4e+0	At4g23895	pleckstrin homology (PH) domain-containing protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.7728.1.A1_at	BM079644	-	-	3e-3	At2g33700	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.8186.1.A1_at	BM073199	hypothetical protein LOC100191549	-	4e-8	At5g17330	GAD	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.888.1.S1_at	CK828040	hypothetical protein LOC100216750	-	1e-7	At1g08880	H2AXA	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.17580.1.S1_at	BM333532	-	-	2e+0	At2g48070	RPH1 (RESISTANCE TO PHYTOPHTHORA 1)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.96	Zm.1423.1.A1_at	CF047935	RING zinc finger protein-like	-	2e-7	At1g69330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.12555.1.A1_x_at	AI673922	-	-	4e+0	At4g28170	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.18115.1.A1_at	CN845273	ring domain containing protein	-	5e-1	At2g23780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.7	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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